Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq476 248 8e-61 seq45 98.7 9e-16 seq6 98.7 9e-16 >seq476 Length=26050 Score = 248 bits (274), Expect = 8e-61 Identities = 931/1432 (65%), Gaps = 46/1432 (3%) Strand=Plus/Minus Query 146905 AACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCA 146964 ||||| || ||||||||||| | | |||| ||| ||| | ||||| | ||||| Sbjct 4500 AACTCACCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGTAGGGCTCGATGGACTCG 4441 Query 146965 TTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTT 147024 || ||||||| || |||||||||| || || |||||| ||||||| || || || Sbjct 4440 TTGTTGCCTAGGATCTGGGCCGTGGAAGCCGTGGGCATGGGGGCCACCAGCAGCGAGTTG 4381 Query 147025 CGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACAT---CGACGAG 147081 || ||||||| | ||| ||||| | | ||||| ||| | ||| || Sbjct 4380 CGAAGACCGTGTTTGACCACGTTCTCCTTGAGCGCCGCCCAGTTCCAGAGACCCGAGGAC 4321 Query 147082 GGCGTCACGTTCCACATGTCGTACTGGAGCA-CTCCTCGACTGGCGGGACTGCCAGCGAA 147140 || || ||| |||||||||| |||||| | | ||| | ||||| || ||| ||| Sbjct 4320 GGGGTGACGCCCCACATGTCGAACTGGAAGATCCCCTTG-CTGGCCGGCGAGCCCTGGAA 4262 Query 147141 CGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACA-GCTTGCCTCGAGCGCTCCATAGT 147199 ||| |||| ||| || | | |||| || | | ||||| || | |||| Sbjct 4261 CGTCTCGTAGGGGCCGA-GCTCCTTGGCAATCTCCATGGACGTCTCGACGGCGGCGTAGT 4203 Query 147200 ATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATAC 147259 | || || ||| ||| | ||||| || || || | ||||||||| || || || Sbjct 4202 AGATCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCCTGCTCGCTCTCG-AACGCGTAG 4144 Query 147260 G-CAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTTT 147318 || || | ||||| || || | ||||||| |||| |||||| || || || Sbjct 4143 TTCATGAGGATGAAGGCGTCCGCGAGGCCCTGGACGCCGATGCCGATGGGGCGGTGG--- 4087 Query 147319 TCGT-TGCTGCGCTT-CGCGC-TCG-CTATGGGATAGTGGTTGCGATCAATAATCTTGTT 147374 || || || ||| ||||| ||| | | ||| |||| |||| || || | |||||| Sbjct 4086 -CGCATGTTGGACTTGCGCGCCTCGGCCACGGGGTAGTAGTTGACGTCGATGACCTTGTT 4028 Query 147375 GAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTC 147434 |||||| || || || || || | | |||||||| | | || | ||||| Sbjct 4027 GAGGTTGCGGGTCACCACCTTGGTGACCTCGTAGAGTTTCTGGTAGTCGAACACGCCGTC 3968 Query 147435 TTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTC 147494 || |||| || |||| || || | || ||||| ||||| |||||| ||| || Sbjct 3967 GTC--CACGAAC---TTGGG-CAGCGCCACGGAGGCCAGGTTGCACACGGCCACCTCGTC 3914 Query 147495 GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATT 147554 || | |||||| || | ||| ||||||||||||| | ||| || | || Sbjct 3913 GGGGGACGTGTACTCCATCACCTCGCAGCACAGGTTGCTGGAGCGGATGGTGCCGAGGTT 3854 Query 147555 TTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614 ||||| ||| || || ||| |||||| ||| |||||||| | || |||| ||||| Sbjct 3853 CTGCTGGTTGGACTTGCGGTTGGCCGCGTCCTTGTAGAGCATGAAGGGCACGCCCGTCTC 3794 Query 147615 GACTTGCGTTTCAACGATA---AACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATA 147671 || |||| || | ||| |||| ||| | |||||| | || || Sbjct 3793 GATCTGCGCGTCCAGGATGGCGAACCA---CAGCTGCTGCGCGTTGATGGTCTTGCGGGC 3737 Query 147672 GCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGC 147731 |||||||||| |||||| ||||| | | |||||||||||| || |||| ||| Sbjct 3736 GCGGCCCTCGCGCTCGTACTTGTCGTAGAGGCTCTCAAACTCGTCCCCCCAGCACTCGTA 3677 Query 147732 AAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCG 147791 || ||||| || | || || | || |||| || ||| || | ||||| Sbjct 3676 GAGCCCGGGGGCCTCGTTGGGGCAGAACAAACTCCACTTGCCGTTGGCCTCCACGCGCTT 3617 Query 147792 CATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTT--TGCAA-TCCTC 147848 ||| ||||| || ||||||||||||||||| | || ||||| || |||| || | Sbjct 3616 CATGAACAGGTCGGGCACCCACAGCGCGTAGAACAGGTCGCGGGCACGGTGCAGCTCGTT 3557 Query 147849 GGCGCCCATGTTGCGTTTCAAATTAAGCA-CGCTATAGATGTCGGCGTGCCAGGGTTCAA 147907 | || | ||||| || | || | | | | | | ||||||||||||||| || | Sbjct 3556 GCCGTGGTTCTTGCG---CAGGTCCAGGAACTCGA-ACACGTCGGCGTGCCAGGGCTCGA 3501 Query 147908 TGTAGACGGCCAGCGCACCTTTACGCTTTCCGCC---CTGGTCGACATGGCGCACCATGT 147964 ||||| ||| | || || ||||| ||||| |||||| || | || || ||| Sbjct 3500 GGTAGATGGCGAAGCTGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTACCGGGCCGTGT 3441 Query 147965 TGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCT 148024 ||| |||||||||| |||||| | |||| | | | |||||||||| || | Sbjct 3440 CGTTGAACACGCGCAGCATGGGGATGATGCCGTTGGAGGAGCCGTTGGTGCCGCGAATGT 3381 Query 148025 TGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATA 148084 |||| | ||| || | | ||||| | | | ||| || || || | |||| || | Sbjct 3380 AGCTGTTGGTGGCACGAATGTTGTGCATGCTGATGCCGATACCCCCCGCCCACTTGGAGA 3321 Query 148085 TGGCAGCGCAATCGCCCAATGTCGTGT---AGATGCCGTCGATGCTGTCGTTTTTGACGC 148141 || ||||| | || | ||||| |||| || |||||| ||||| | | | Sbjct 3320 TGCAGGCGCACT-GCTTGAG--CGTGTCATAGATACCCTCGATGGAGTCGTCCTGCATGG 3264 Query 148142 CAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGAC 148201 | | | || || || ||| |||||| | ||||||| || || || || || Sbjct 3263 CCAATAGGAAGCAGGAGGACAGCTGCGGACGCGGCGTTCCGGCGTTAAACAGCGTCGGCG 3204 Query 148202 TCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGT 148261 |||||||||| || || || || ||| | |||||||| | ||| | | ||||| Sbjct 3203 TCGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTACGTCTCCAGCGCGGCCTGGATGT 3144 Query 148262 CGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTC 148313 || | ||| ||||||||||| |||||||| | ||| ||||| || || || Sbjct 3143 CGGCCTTGTGGATGCCCAGCGCCACGCGCATAATCATTTGCTGCGGACGCTC 3092 >seq45 Length=78880 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | |||| || | | | ||||| || || |||||||||||||||| || Sbjct 57052 ACGCAGGCGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAACGT 56993 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || || | |||| |||||||| || || || || ||||| Sbjct 56992 GCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCC 56933 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||||| || |||| | || | | || | ||||||||| || | Sbjct 56932 CTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAG 56873 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | ||| || || ||||| || || | ||| |||||||| Sbjct 56872 CGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 56831 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||||||| || || || || ||||| || || | Sbjct 57252 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCG 57193 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || || || ||||| || || || ||||| || |||| Sbjct 57192 AAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACG 57133 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| || | ||| | ||| || || ||||| || || Sbjct 57132 TTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTC 57073 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 57072 ACGAAGATCTGCATG 57058 >seq6 Length=256829 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 246176 ACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 246117 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||||| ||||| || || | |||| || ||||| || || || || ||||| Sbjct 246116 GCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCC 246057 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||| || || |||| | || | | || | ||||||||| |||| Sbjct 246056 CTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAG 245997 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | || || || ||||| || |||| ||| |||||||| Sbjct 245996 CGTGATGGTCTTGCCCGTCAGCGTCTTTACGAAGATCTGCAT 245955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476576782713720