Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_025963.1 Length=139981 Score E Sequences producing significant alignments: (Bits) Value seq4 113 4e-20 >seq4 Length=136950 Score = 113 bits (124), Expect = 4e-20 Identities = 135/180 (75%), Gaps = 4/180 (2%) Strand=Plus/Plus Query 5340 CTCGCAGATGAGCTGCGCCACGCGGTCGCCTCGCCGCACCACGAAGGTCTCTTGGC--CG 5397 |||| ||||||||||||||||||||| || ||| |||| ||| ||| || ||| || Sbjct 14570 CTCGAGGATGAGCTGCGCCACGCGGTCCCCGCGCTGCACGGGGAA-GTC-CTCGGCCGCG 14627 Query 5398 AAGTTGAAGAGCACCACTCCCAGGTTCCCTCGGAAGTCCGGGTCCACGACGCCCGCTCCC 5457 |||||| || | ||| |||| ||| || ||| |||| | ||| | |||||||| ||| Sbjct 14628 TGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCGATCACGCCCGCGCCC 14687 Query 5458 ACATCCACGAAGTTGTTTACCGCGAGACCGGACCTCGGCGCCACGCGACCGTAGCAGCCG 5517 || | ||| || || | ||| || || || | |||||||||||| ||||||||||| Sbjct 14688 GTGTCGATGAACTTCTTGAGCGCCAGGCCAGAGCGCGGCGCCACGCGCGCGTAGCAGCCG 14747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447778862433720