Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1844 280 2e-70 >seq1844 Length=5900 Score = 280 bits (310), Expect = 2e-70 Identities = 463/657 (70%), Gaps = 11/657 (2%) Strand=Plus/Plus Query 146920 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCC 146979 || ||||| || || || || || ||||| || || || | ||| ||||| || || Sbjct 1810 AGCGGCTCGACATGATTCAGATACACGTGGGCATCTCCAATAACGTGAACAAACTCTCCA 1869 Query 146980 GGCTTAAGGCCGGTCACGTGGGCCACCATGTAG-GTGAGCAGCGAGTAGCTGGCTATGTT 147038 ||||| | || | ||| || || |||| || | || |||| | |||||| || || || Sbjct 1870 GGCTTCAATCCAGCCACCTGCGCAACCA-GTCGCGTAAGCAATGCGTAGCTAGCGATATT 1928 Query 147039 GAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCC 147098 ||| || || || || |||||||| |||| | |||||||| |||||| || ||||| || Sbjct 1929 GAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAGGAAAGCTCGCC 1988 Query 147099 GTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTC 147158 |||||||||||| |||||||| | |||||||||||||| |||||||| | || || Sbjct 1989 GTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCATCTCATTGAGATC 2048 Query 147159 CGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTC 147218 ||| || ||||| ||||| | ||| | || | | | |||||| | | || | Sbjct 2049 CGCCGGATTCCACGCCGACAGCACGATGCGGCGGTCCGTCGGGTTCGTGCGCAGCTTGTG 2108 Query 147219 GATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCACGT 147277 |||||||| | |||||||||||||||||||| ||| | | | ||| |||| || Sbjct 2109 GATAACCCCCGCGAGCTGGTCCACGCCCTGGCCAGTGTA-ATCGGCATGCATGTCCGTGT 2167 Query 147278 ACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTC 147337 || |||| ||||| |||| ||||||||||||||| || || || |||||||| || || Sbjct 2168 ACTTGGCGCCAAAATGCCGCCACTGGAAGCCGTAGACCGGTCCGAGGTCGCCCACCTCTC 2227 Query 147338 TGTGCGAGAAGCCCGC-CCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCC 147396 | || | ||||| | | | ||| ||||| | ||| | | | ||||||||||| Sbjct 2228 -GCGCCTGCAGCCCTCGACTGTCCAGATACTCGCGCGACGCATTGCCGTCCCAGATGTGG 2286 Query 147397 A-CTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTC 147455 | ||| | || | ||| | | | ||| ||| | ||||||||| |||||||| Sbjct 2287 ATGTCCTTCTGCTG-CAGCGAGTGCGCGCTGGTGTCGCCGCTGATGAACCACAGCAGCTC 2345 Query 147456 CTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAAC---TGGTCCCT 147512 ||| || || | ||| || || | |||||| || ||||| |||||| | |||||| Sbjct 2346 CTCGGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGGAACACGTTGTCCCT 2405 Query 147513 CAGCGAATACCTCGCCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTC 147569 || ||| | ||| | || || || |||||||||||||| ||||| | ||| Sbjct 2406 GAGGCTGAACCGCATCTGCGCGCCGAAGACCGACAGCGTGCCCGTCCCCGTGCGGTC 2462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583445864872800