Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq476 138 1e-27 seq45 136 4e-27 seq6 136 4e-27 seq745 116 4e-21 >seq476 Length=26050 Score = 138 bits (152), Expect = 1e-27 Identities = 895/1417 (63%), Gaps = 34/1417 (2%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || || ||| | ||||||||||| ||||||| ||| | ||||| | ||||| || Sbjct 3101 CAGCAAATGATTATGCGCGTGGCGCTGGGCATCCACAAGGCCGACATCCAGGCCGCGCTG 3160 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || |||||| | | ||||| ||| || |||||||| |||| || ||||| | Sbjct 3161 GAGACGTACGAGCTCATGTCGCAGAAGTTCTTCACGCACGCGACGCCGACGCTGTTTAAC 3220 Query 7684 GCGGGCACAAACGCG-CCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742 || || || |||| || || ||||||| || || | | |||||| || ||| Sbjct 3221 GCCGGAAC-GCCGCGTCCGCAGCTGTCCTCCTGCTTCCTATTGGCCATGCAGGACGACTC 3279 Query 7743 CATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGG 7802 |||||| || || || ||||||| | |||||| || ||||| | | || || Sbjct 3280 CATCGAGGGTATCTATGACACGCTCAAGCAGTGCGCCTGCATCTCCAAGTGGGCGGGGGG 3339 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCA-TCGTGTCCACCAACG 7861 || || | | | | || || | || |||| | ||| || ||| | |||||||| Sbjct 3340 TATCGGCATCAGCATGCACAACATTCGTGCCACCAACAGCTACATTCGCG-GCACCAACG 3398 Query 7862 GAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAG 7921 | ||| ||| | |||||| ||||||||||||| || ||| || | || | Sbjct 3399 GCTCCTCCAACGGCATCATCCCCATGCTGCGCGTGTTCAACGACACGGCCCGGTACGTGG 3458 Query 7922 ACCAG---GGGGGAAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGG 7978 ||||| || || |||||||| ||| | |||||||| | ||||| |||||||| | Sbjct 3459 ACCAGGGCGGCGGCAAGCGCAAGGGCAGCTTCGCCATCTACCTCGAGCCCTGGCACGCCG 3518 Query 7979 ACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCA--AAGCGCG 8036 || | | || | || | ||||| ||| || ||| | ||| || || Sbjct 3519 ACGTGTTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAACGA--GCTGCACCGTGCCCG 3576 Query 8037 CGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGC 8096 ||| || |||| || ||||||||||||| ||||| |||| |||||| | | ||| Sbjct 3577 CGACCTGTTCTACGCGCTGTGGGTGCCCGACCTGTTCATGAAGCGCGTGGAGGCCAACGG 3636 Query 8097 ACAATGGTCGCTCATGTGCCCCGATCGTTG--CCCTTTATTAAAAAACGTTTACGGTTCA 8154 | ||| | | |||||| | || | ||| | | | | | || | Sbjct 3637 CAAGTGGAGTTTGTTCTGCCCC-AACGAGGCCCCCGGGCTCTACGAGTGCTGGGGGGAC- 3694 Query 8155 AAATTTGAACAATTGTACAAACAATACGAACACGACGG-CGCGTACGTGCGGCAAGTGAA 8213 | ||||| | ||| | | ||||| | ||| || |||| || | | | | || Sbjct 3695 GAGTTTGAGAGCCTCTACGACAAGTACGAGCGCGAGGGCCGCGCCCGCAAGACCA-TCAA 3753 Query 8214 AGCGCGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACAT 8273 |||| | ||| |||||| | || || | ||| || || |||| | ||| Sbjct 3754 CGCGCAGCAGCTGTGGTTCGCCATCCTGGACGCGCAGATCGAGACGGGCGTGCCCTTCAT 3813 Query 8274 GCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTG 8333 ||| ||||| ||||| |||| ||| ||| || ||| | |||||||| | | Sbjct 3814 GCTCTACAAGGACGCGGCCAACCGCAAGTCCAACCAGCAGAACCTCGGCACCATCCGCTC 3873 Query 8334 CAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAA 8393 |||||| |||||| || | | |||||| | |||||||| |||||||| ||||| Sbjct 3874 CAGCAACCTGTGCTGCGAGGTGATGGAGTACACGTCCCCCGACGAGGTGGCCGTGTGCAA 3933 Query 8394 TCTAGCGTCGGTGTGTTTAAACGCGTTCGTTGATCGACGCTCAAACACTTACGACTTTGA 8453 || || || ||| | | |||||| || ||||| | | ||||| | Sbjct 3934 CCTGGCCTCCGTGGCGCTGCCCAAGTTCGTGGA-CGACG-----GCGTGTTCGACTACCA 3987 Query 8454 ACAATTGAAAAACGCCGTGCAAGTGACGGTACGCAATTTAGATCGCATCATTGATGTCAA 8513 || | | | | | | ||| | ||||| | | |||| || ||||| Sbjct 3988 GAAACTCTACGAGGTCACCAAGGTGGTGACCCGCAACCTCAACAAGGTCATCGACGTCAA 4047 Query 8514 TTTTTATCCCTTGGAAGAAGCGCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGG 8573 | || ||| ||| || |||||| || |||||||||||| | ||| | ||| | || Sbjct 4048 CTACTACCCCGTGGCCGAGGCGCGCAAGTCCAACATGCGCCACCGCCCCATCGGCATCGG 4107 Query 8574 CGTGCAAGGTCTGGCCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGC 8633 ||| || || || || ||||| || | | || | | | | ||| ||| | | || Sbjct 4108 CGTCCAGGGCCTCGCGGACGCCTTCATCCTCATGAACTACGCGTTCGAGAGCGAGCAGGC 4167 Query 8634 GCGCATGCTCAACATAAAAATAGCGGAAACGGTGTATTACGGCGCATT--AGAAG-CCAG 8690 ||| |||||||| || || || ||| | || |||| ||| | ||| | ||| Sbjct 4168 CCGCGAGCTCAACAAGAACATCTTCGAGACGATCTACTACGCCGCCGTCGAGACGTCCA- 4226 Query 8691 CTGTCAACTTGCCCGAGAATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCG 8750 || | ||||| || | ||| | ||||| ||| | |||| || |||||| Sbjct 4227 -TG-GAGATTGCCAAGGAGCTCGGCCCCTACGAGACGTTCCAGGGCTCGCCGGCCAGCAA 4284 Query 8751 CGGAATATTGCAATACGACATGTGGAATGTCACGCCCACCTC---TTTGTGGAATTGGAG 8807 || || || || | |||||||||| ||||| || |||| | | ||||| ||| | Sbjct 4285 GGGGATCTTCCAGTTCGACATGTGGGGCGTCACCCCGTCCTCGGGTCTCTGGAACTGG-G 4343 Query 8808 CGATTTGAAACGCAAAATTGCTC-AATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACA 8866 || || | || || || || |||| | ||||| |||||| ||||||| || Sbjct 4344 CGGCGCTCAAGGAGAACGTGGTCAAACACGGTCTTCGCAACTCGCTGCTGGTGGCCCCCA 4403 Query 8867 TGCCCACCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCA 8926 ||||||| || | || || || || | || |||||||| ||| | ||||| | ||| Sbjct 4404 TGCCCACGGCTTCCACGGCCCAGATCCTAGGCAACAACGAGTCCATCGAGCCCTACACGT 4463 Query 8927 ACAACGTGTACGTGAGACGAGTGTTGGCCGGCGATTT 8963 |||| ||||| | || ||| ||||||| || || Sbjct 4464 CCAACATGTACAACCGCCGTGTGCTGGCCGGTGAGTT 4500 >seq45 Length=78880 Score = 136 bits (150), Expect = 4e-27 Identities = 165/222 (74%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-CAACGGTGTG 134554 || || | ||| ||||| || || || ||||| || ||||||||||||| |||| ||| | Sbjct 57048 AGGCGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAAC-GTGCG 56990 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 ||| || ||||| ||||| || || |||| ||||||||| || ||||| ||||| || Sbjct 56989 GCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTC 56930 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || ||||| ||||| || || || ||| | | ||| |||| |||||||| || || Sbjct 56929 CTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGT 56870 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| | || || ||||| || ||||| || Sbjct 56869 GATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATCTT 56828 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | || || | ||| ||||| || || || ||||| || |||||||||||| Sbjct 57288 TTTCCGCCACGAAGACGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCG 57229 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | ||| | ||| || ||||| ||||| || || |||| ||||||||| || ||| Sbjct 57228 CTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGC 57169 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || ||||| || || ||||| ||||| || || || ||| | | ||| |||| ||| Sbjct 57168 GGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCC 57109 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || ||||| | || || ||||| || ||||| Sbjct 57108 ACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 57059 >seq6 Length=256829 Score = 136 bits (150), Expect = 4e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| ||||| || ||||| || ||||||||||||| | ||| | Sbjct 246172 AGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 246113 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || || |||| |||||||| || ||||| ||||| || Sbjct 246112 CCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCC 246053 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || || ||| | | ||| |||| ||||||||||| || Sbjct 246052 TTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTG 245993 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | || || ||||| || ||||| Sbjct 245992 ATGGTCTTGCCCGTCAGCGTCTTTACGAAGATCTGCAT 245955 >seq745 Length=17434 Score = 116 bits (128), Expect = 4e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || ||||||||||| | ||| | ||| |||||||| ||||| || || | Sbjct 12114 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 12055 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 |||| |||||||| || ||||| ||||| || || || || ||||| || ||||| || Sbjct 12054 TCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 11995 Query 134644 CCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702 ||||| ||||||||| |||||||| || || ||||| || || || | || || || Sbjct 11994 -CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 11936 Query 134703 AAAATTTGCAT 134713 || || ||||| Sbjct 11935 AAGATCTGCAT 11925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505361903918040