Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1844 86.0 5e-12 >seq1844 Length=5900 Score = 86.0 bits (94), Expect = 5e-12 Identities = 201/299 (67%), Gaps = 6/299 (2%) Strand=Plus/Minus Query 41022 GCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAG 41081 |||||||| || |||| | || |||||| | || || || || |||| || ||| Sbjct 2063 GCGTGGAATCCGGCGGATCTCAATGAGATGGCGCTCCCGCCGTGCCACATGTTCTGCCAG 2004 Query 41082 TTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGA 41141 || ||||| | | || || || || || || |||| || | || | ||||||||| Sbjct 2003 TTCTACGTGGCCGACGGCGAGCTTTCCTGCCAGATGTACCAGCGCTCGGCCGACATGGGA 1944 Query 41142 CTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTT 41201 || || || ||||| || || || || || || |||| ||| || |||| || || Sbjct 1943 CTTGGCGTGCCGTTCAATATCGCTAGCTACGCATTGCTTACGCGACTGGTTGCGCAGGTG 1884 Query 41202 ACCAATTTAAAACCTGGTGAATTTGTTCACACGTTA--GGAGATGGACATATTTACATTA 41259 | || || ||||| || |||||| ||||||| ||||||| || | || | | Sbjct 1883 GCTGGATTGAAGCCTGGAGAGTTTGTT--CACGTTATTGGAGATGCCCACGTGTATCTGA 1826 Query 41260 ATCACATAGAGCCGTTAACAGAA-CAACTGACACGAAAACCTAGACCATTTCCAACGCT 41317 |||| | |||||| | ||||| || || || |||| ||| | || || || || || Sbjct 1825 ATCATGTCGAGCCGCT-CCAGAAGCAGCTTACTCGAACACCGCGTCCGTTCCCGACACT 1768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397428016240885