Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq476 187 3e-42 seq4292 109 7e-19 seq1778 86.0 8e-12 >seq476 Length=26050 Score = 187 bits (206), Expect = 3e-42 Identities = 1102/1739 (63%), Gaps = 48/1739 (3%) Strand=Plus/Minus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTG 110428 |||||||| ||||||||||| || | ||||| ||||| | ||||| || | ||||||| Sbjct 4812 TAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAGCTTG 4753 Query 110429 GACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCCCC 110488 || || || | ||| || ||| | ||||| ||| |||| || || Sbjct 4752 CTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTAGGCACCG 4693 Query 110489 CGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGAGA 110548 || | |||| || || | || ||||| ||| || ||||| || || || Sbjct 4692 CGGTCGGCCGACAAGTCCAGTACTGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTC 4633 Query 110549 TTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATG 110608 | ||||| | ||| ||||| | | ||||| | ||| || || | |||| || Sbjct 4632 TCCTTGACGTGATCGGGGATGGCCTTCACCTTCTGCACGGAGCCGCCGTCGTTCAGGATC 4573 Query 110609 AGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTG 110668 ||| || || | ||||| || | || |||| || || | |||| |||| Sbjct 4572 TGATTGCGCACGTCGGGTGTCCAGATGCCCAGCTCAATGAGCTCCTTCATCAGGTACTTG 4513 Query 110669 TTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGT 110728 || || || |||||||| || || | | ||| ||||| | ||||| || Sbjct 4512 TTCACGATCGTGAACTCACCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGTAGGGC 4453 Query 110729 TCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATC 110788 || | | | || || || || | ||| || || ||||| || || ||||| || |||| | Sbjct 4452 TCGATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAAGCCGTGGGCATGGGGGCCACC 4393 Query 110789 AAAAGACTGTTACGAAGACCCTTCTCCTTGATG-CGTTC--CTTGAGAACATCCCAGTCG 110845 | || ||| |||||||| | | ||| ||||| |||||| | |||||| Sbjct 4392 AGCAGCGAGTTGCGAAGACCGTGTT---TGACCACGTTCTCCTTGAGCGCCGCCCAGTTC 4336 Query 110846 TAGTT----GAGCTTGGTTTCACCTTCCCACATGTCAAACTG-AAGCACCCCTTGGGACG 110900 || ||| || | || |||||||||| ||||| ||| ||||||| | Sbjct 4335 CAGAGACCCGAGGACGGGGTGACGC-CCCACATGTCGAACTGGAAGATCCCCTTGCTG-G 4278 Query 110901 CGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCA-GCCAATTCACA-GCTCGC 110958 | || || |||| || || || |||| || | ||| | | |||| || | || Sbjct 4277 CCGGCGAGCCCTGGAACGTCTCGTAGGGGCC--GAGCTCCTTGGCAATCTCCATGGACGT 4220 Query 110959 CTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATC 111018 ||| | || |||| || || || || ||||| || | ||| ||| | || Sbjct 4219 CTCGACGGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCCTGCTC 4160 Query 111019 TGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACC 111078 || || |||||| | || || | |||||||| || || || || | || Sbjct 4159 GCTCTCGAACGCGTAGTTCATGAGGATGAAGGCGTCCGCGAGGCCCTGGACGCCGATGCC 4100 Query 111079 AATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTC 111138 || || | ||| ||||| || ||||| ||||| | ||||| || | || ||| Sbjct 4099 GATGGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCGGCCACGGGGTAGTAGTTGACGTC 4040 Query 111139 AATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATC 111198 ||||| ||| || || ||| || | ||| |||| || | ||||| | || || Sbjct 4039 GATGACCTTGTTGAGGTTGCGGGTCACCACCTTGGTGACCTCGTAGAGTTTCTGGTAGTC 3980 Query 111199 AAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAAC 111258 || || | || | || |||| || || || | || |||| ||||| || Sbjct 3979 GAACACGC------CGTCGTCCACGAACTTGGGCAGCGCCACGGAGGCCAGGTTGCACAC 3926 Query 111259 AGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTG---GAACTCTT 111315 ||| ||| || |||||||| | | || || | |||| || | Sbjct 3925 GGCCACCTCGTCGGGGGACGTGTACTCCATCACCTCGCAGCACAGGTTGCTGGAGCGG-- 3868 Query 111316 AATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTA 111375 || || || | |||| ||||| ||| |||| ||| ||||||||||||||| | Sbjct 3867 -ATGGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCCGCGTCCTTGTAGAGCATGAA 3809 Query 111376 GGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTAC 111435 |||| |||||||| |||| | | || || || ||| || | || || || Sbjct 3808 GGGCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCA--CAGCTGCTGCGCGTTG 3751 Query 111436 AATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTC 111492 | ||| ||| || || ||||| ||||||||| ||||||| |||||||| || Sbjct 3750 A-TGGTCTTGCGGGCGCGGCCCTCGCGCTCGTACTTGTCGTAGAGGCTCTCAAACTCGTC 3692 Query 111493 ACCCACCGCG-TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCAC 111551 ||| | || ||| |||| || || |||| || || ||||| | | ||| | || Sbjct 3691 CCCC-CAGCACTCGTAGAGCCCGGGGGCCTCGTTGGGGCAGAACAAACTCCACTTGCCGT 3633 Query 111552 CTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TA 111610 |||| || ||||||||||| ||||| || | |||||| | | || || || | Sbjct 3632 TGGCCTCCACGCGCTTCATGAACAGGTCGGGCACCCACAGCGCGTAGAACAGGTCGCGGG 3573 Query 111611 CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCG 111670 ||| | || | |||| || ||||| || | || |||||||| | | || ||| Sbjct 3572 CACGGTGCAGC-TCGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAACACGTCGGCG 3514 Query 111671 TGCCATGGCTCAAGATAGACTGCGATAGAT-CCCTTTCG---ACGCCCAGCTTGATTTAC 111726 ||||| ||||| || |||| |||| || | ||||| || | || | || | || Sbjct 3513 TGCCAGGGCTCGAGGTAGATGGCGA-AGCTGCCCTTGCGCTTGCCGCCGCCCTGGTCCAC 3455 Query 111727 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 111786 || || || ||| |||| || ||||| ||||| || || || || | || || || Sbjct 3454 GTACCGGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCGTTGGAGGAGCCGTT 3395 Query 111787 TGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCC 111845 || || ||||| || | || |||| | | | || ||| || || ||||||| Sbjct 3394 GGTGCCGCGAAT-GTAGCTGTTGGTGGCACGAATGTTGTGCATGCTGATGCCGATACCCC 3336 Query 111846 CAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGT 111905 | |||||||| ||||| || |||| | | || || |||||||||| | ||| |||| Sbjct 3335 CCGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATACCCTCGATGGAGT 3276 Query 111906 CCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGA 111965 | |||| |||| | |||||||| ||||| |||||| | || || || || || | Sbjct 3275 CGTCCTGCATGGCCAATAGGAAGCAGGAGGACAGCTGCGGACGCGGCGTTCCGGCGTTAA 3216 Query 111966 AGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAG 112024 | || || || || ||||| |||| | || | || ||||| ||||| ||||||| Sbjct 3215 ACAGCGTCGGCGTCGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTCGTACGTCTCCAGC 3157 Query 112025 ACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 | | | ||||| || ||||||||| | || || ||||| | ||| | ||| || Sbjct 3156 GCGGCCTGGATGTCGGCCTTGTGGATGCCCAGCGCCACGCGCATAATCATTTGCTGCGG 3098 >seq4292 Length=2137 Score = 109 bits (120), Expect = 7e-19 Identities = 283/422 (67%), Gaps = 12/422 (3%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 882 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCATC 823 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 122489 |||| || || |||||| |||| | || |||||| |||| | | | || ||||| Sbjct 822 CAGTCGAACGGGTTCTTCACGTTGTAGATCTTTGGCACACCCAGCGAG-TACAGCAGACG 764 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGT-TAC 122548 || | ||| |||| ||||||| | |||| | | |||||||| ||||| || | || Sbjct 763 GTCGGCCACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCAC 704 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 | ||||| | ||| | |||| | | ||| ||| | ||||| || ||| || ||| Sbjct 703 A-GGGAGCGAGTCGCGCACGAACTCGTGCTCGATCACCACCGCGTCGCGCACAATCTCGT 645 Query 122609 GGA----TAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAAC 122664 | | | ||| || || | | || | | | ||| ||| || || Sbjct 644 GCACGCGGCTCTCCGGCAGCTTGTTCACCA-GCTTGGAGTACATGAG--GCAC-GCGAAG 589 Query 122665 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATG 122724 ||| ||| | |||||| || ||| || || || || ||||||| || || |||||| Sbjct 588 TCCGTGTGCATACCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATG 529 Query 122725 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 122784 || || |||||||| | ||| | || | |||||| || || |||||||| || |||||| Sbjct 528 AGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAAATGCCCTCC 469 Query 122785 AC 122786 || Sbjct 468 AC 467 >seq1778 Length=6196 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 356 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 415 Query 145342 CAGGTAGGAGCT 145353 | |||||||||| Sbjct 416 CCGGTAGGAGCT 427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627986648239200