Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq476 262 5e-65 seq4292 179 5e-40 >seq476 Length=26050 Score = 262 bits (290), Expect = 5e-65 Identities = 1110/1731 (64%), Gaps = 48/1731 (3%) Strand=Plus/Minus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 ||||||||| || ||||||||||||| ||||||||| || | ||||| || | | ||| Sbjct 4813 GTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAGCTT 4754 Query 117902 GGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 117961 | || ||| || | ||| || ||| | || || ||| || || Sbjct 4753 GCTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTAGGCACC 4694 Query 117962 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAG 118021 || || |||| || || | || ||||| |||||| |||||||| ||| |||| Sbjct 4693 GCGGTCGGCCGACAAGTCCAGTACTGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTT 4634 Query 118022 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCAT 118081 | ||| | | ||| ||||| || | || || | ||| || || | || | || Sbjct 4633 CTCCTTGACGTGATCGGGGATGGCCTTCACCTTCTGCACGGAGCCGCCGTCGTTCAGGAT 4574 Query 118082 GAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTT 118141 ||| || || || ||||| || | || |||| |||| || || | ||| Sbjct 4573 CTGATTGCGCACGTCGGGTGTCCAGATGCCCAGCTCAATGAGCTCCTTCATCAGGTACTT 4514 Query 118142 ATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGG 118201 || || | |||||||| || || || | || || |||| |||||| || Sbjct 4513 GTTCACGATCGTGAACTCACCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGTAGGG 4454 Query 118202 CTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCAT 118261 ||| | | |||| ||||| || | ||| ||||| ||||| || ||||||||||| |||| Sbjct 4453 CTCGATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAAGCCGTGGGCATGGGGGCCAC 4394 Query 118262 GAGAAGGCTGTTACGGAGACCCT-TTTCCCTAATGCGTTC--CTTGAGAGCGTCCCAGTC 118318 || || ||| || ||||| | ||| | | ||||| |||||| || |||||| Sbjct 4393 CAGCAGCGAGTTGCGAAGACCGTGTTTGACCA---CGTTCTCCTTGAGCGCCGCCCAGTT 4337 Query 118319 GTAGTT----GAG--CTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGA 118372 || ||| | || | ||| ||||| || ||||||| ||| || | | Sbjct 4336 CCAGAGACCCGAGGACGGGGTGACGCCC---CACATGTCGAACTGGAAGATCCCCTTGCT 4280 Query 118373 CGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC--GCCAAT-TCGGAGCT 118429 || ||||| |||| || ||||| || ||||| | |||| | |||| || | Sbjct 4279 GGCCGGCGAGCCCTGGAACGTCTCGTAGGGGCCG---AGCTCCTTGGCAATCTCCATGGA 4223 Query 118430 CGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTC 118489 || ||||| ||| |||| || || || || || ||| || | | ||||| Sbjct 4222 CGTCTCGACGGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCCTG 4163 Query 118490 GTCGGAATCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCG 118547 ||| || |||||| ||| || | || || | |||||||| || ||||| ||| Sbjct 4162 CTCGCTCTCGAACGCGTAGTT--CATGAGGATGAAGGCGTCCGCGAGGCCCTGGACGCCG 4105 Query 118548 AGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTC 118607 | ||| || ||||| || | ||| || ||||| || || ||||||| || | || Sbjct 4104 ATGCCGATGGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCGGCCACGGGGTAGTAGTTG 4045 Query 118608 CTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCG 118667 ||||| ||| | || || || ||| || ||||| |||| || | || || | | Sbjct 4044 ACGTCGATGACCTTGTTGAGGTTGCGGGTCACCACCTTGGTGACCTCGTAGAGTTTCTGG 3985 Query 118668 TAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTA 118727 || || || || | || | || |||| || || || | || ||||| || Sbjct 3984 TAGTCGAACACGC------CGTCGTCCACGAACTTGGGCAGCGCCACGGAGGCCAGGTTG 3931 Query 118728 CACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT--TGAAC 118785 ||||| | ||| || |||||||| || | || ||||| ||| || | Sbjct 3930 CACACGGCCACCTCGTCGGGGGACGTGTACTCCATCACCTCGCAGCACAGGTTGCTGGAG 3871 Query 118786 TCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCA 118845 |||||||| | ||||| || || ||||| ||| ||| |||||||| |||| Sbjct 3870 CGG--ATGGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCCGCGTCCTTGTAGAGCA 3813 Query 118846 TGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTG 118905 || | ||| |||||||| | || | | || || || ||| || | || || Sbjct 3812 TGAAGGGCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCA--CAGCTGCTGCGC 3755 Query 118906 GCACAGTGGCGTTG---GCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACT 118962 | | ||| ||| || || ||||| ||||||||| ||||||| ||||||| Sbjct 3754 GTTGA-TGGTCTTGCGGGCGCGGCCCTCGCGCTCGTACTTGTCGTAGAGGCTCTCAAACT 3696 Query 118963 CTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGAC 119022 | || ||| | ||| ||||||| || |||| | |||||||| | | ||| | | Sbjct 3695 CGTCCCCCCAGCACTCGTAGAGCCCGGGGGCCTCGTTGGGGCAGAACAAACTCCACTTGC 3636 Query 119023 CACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATC-C 119081 | |||| || ||||||||||| ||||| || | ||| ||||| |||| || || | Sbjct 3635 CGTTGGCCTCCACGCGCTTCATGAACAGGTCGGGCACCCACAGCGCGTAGAACAGGTCGC 3576 Query 119082 CGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCC 119141 | || | || | || | || || || |||| |||| || || | | || Sbjct 3575 GGGCACGGTGCAGC-TCGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAACACGTCG 3517 Query 119142 GCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTT 119198 |||||||| || || ||||| | |||| ||||| || | || |||||| Sbjct 3516 GCGTGCCAGGGCTCGAGGTAGATGGCGAAGCTGCCCTTGCGCTTGCCGCCGCCCTGGTCC 3457 Query 119199 ACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCA 119258 || |||| || ||| |||| || || || ||||| || ||||| || | ||| ||| Sbjct 3456 ACGTACCGGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCGTTGGAGGAGCCG 3397 Query 119259 TTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCC 119318 || || || ||||| || |||| | | | ||| ||| || || |||||| Sbjct 3396 TTGGTGCCGCGAATGTAGCTGTTGGTGGCACGAATGTTGTGCATGCTGATGCCGATACCC 3337 Query 119319 CCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAG 119378 || |||||||| ||||| ||||||| | |||| || | ||||| || ||||| ||| Sbjct 3336 CCCGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATACCCTCGATGGAG 3277 Query 119379 TCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTG 119438 || ||| | || | ||||||||| |||| || || | || || || ||||| Sbjct 3276 TCGTCCTGCATGGCCAATAGGAAGCAGGAGGACAGCTGCGGACGCGGCGTTCCGGCGTTA 3217 Query 119439 AAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCGTAGGTCTCCAA 119497 || || || || |||||||| |||| | || | || ||||| ||||| ||||||| Sbjct 3216 AACAGCGTCGGCGTCGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTCGTACGTCTCCAG 3158 Query 119498 GACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACAT 119548 |||| | ||||| || ||| || || | || || ||||||| ||| Sbjct 3157 CGCGGCCTGGATGTCGGCCTTGTGGATGCCCAGCGCCACGCGCATAATCAT 3107 >seq4292 Length=2137 Score = 179 bits (198), Expect = 5e-40 Identities = 538/816 (66%), Gaps = 26/816 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | | ||| | ||||| Sbjct 882 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCATC 823 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | || || |||||||| ||| | || |||||| || | | | || ||||| Sbjct 822 CAGTCGAACGGGTTCTTCACGTTGTAGATCTTTGGCACACCCAGCGAGTACAGCAGACGG 763 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT-ACA 129906 || | ||| |||| ||||||| |||| | | |||||||| ||||| || | ||| Sbjct 762 TCGGCCACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCACA 703 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||||| ||| | |||| | | ||| || |||| || || ||||| || |||| Sbjct 702 -GGGAGCGAGTCGCGCACGAACTCGTGCTCGATCACCACCGCGTCGCGCACAATCTCGTG 644 Query 129967 AATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC------CACGGCAA 130019 | | | ||| | ||| | || || |||| |||| | |||| | | Sbjct 643 CACGCGGCTCTCCGGCAGCT----TGTTCACCAGCTTG--GAGTACATGAGGCACG-CGA 591 Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079 | ||| ||| | ||||||||||||| ||| || || |||||||||| ||| || |||| Sbjct 590 AGTCCGTGTGCATACCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCA 531 Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 |||| || |||||||| | |||||| || | || || ||||| |||||||| || |||| Sbjct 530 TGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAAATGCCCT 471 Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGAC-TTTGTATCAAACCAC 130198 |||| |||||||| | |||||||| | | || || || | || ||||| Sbjct 470 CCACGGCGGCGAACGCCAGCAGACGCTCCGGGTACGA-CGACACACGCGGGTCGCACCAC 412 Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGT 130258 || | |||||| ||||| || |||| | ||||||| |||| ||| || | || Sbjct 411 TTGAGCGCCCAGTGCGCTTTCTTCTTCACGCACGGGATCGTCTCGATGGCGCGCAGCAGG 352 Query 130259 TCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCA 130318 | | ||| || | || ||||||||| |||| ||||| || || ||| | Sbjct 351 TGGTCCTTCTCCACGGCGTCCTTGATGTACGTATCAATGAGCAGCGAGTACACCTCGGCG 292 Query 130319 TGGACCATTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTA 130376 |||| ||| ||||| ||| | ||||||| |||| | ||| | ||| | Sbjct 291 TGGA--TGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGGACCTCGGGCACCTGCA 234 Query 130377 CCTCATCTGCAAAATTGTTATTG--ATATTCTCAAAAACAATTCCATCGGACCCAGCAAA 130434 | |||| ||| || | | || | | ||||| ||||| || ||| | |||| || Sbjct 233 CTTCAT-TGCTGAAGT-TCATGGCCAGGTTCTCGTTCACAATACCGTCGCTCGCAGCGAA 176 Query 130435 AAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTC 130494 |||||||| | | ||| ||||| | | || || || ||||| || |||||| | Sbjct 175 GAACGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGGTTCGCCCAGTCCTT 116 Query 130495 AAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 || || | | || || | |||||| || ||||| Sbjct 115 GAGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCA 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618390541248120