Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq476 192 7e-44 seq4292 111 2e-19 >seq476 Length=26050 Score = 192 bits (212), Expect = 7e-44 Identities = 1109/1745 (64%), Gaps = 58/1745 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| | ||| | ||||||||||| | || || || || ||||| | | | Sbjct 3098 CCGCAGCAAATGATTATGCGCGTGGCGCTGGGCATCCACAAGGCCGACATCCAGGCCGCG 3157 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 ||||||| ||||| ||||| || | || | |||| ||||| || || || || || Sbjct 3158 CTGGAGACGTACGAGCTCATGTCGCAGAAGT-TCTTCACGCACGCGACGCCGACGCTGTT 3216 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 || || || || || | || || ||||| |||||||| | |||| |||| || Sbjct 3217 TAACGCCGGAACGCCGCGTCCGCAGCTGTCCTCCTGCTTCCTATTGGCCATGCAGGACGA 3276 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| ||| | |||||||||| || || | | |||| || ||||| |||||||| || Sbjct 3277 CTCCATCGAGGGTATCTATGACACGCTCAAGCAGTGCGCCTGCATCTCCAAGTGGGCGGG 3336 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAA 104519 |||||| || || ||| || | | | |||| || | || ||||| || || | Sbjct 3337 GGGTATCGGCATCAGCATGCACAACATTCGTGCCACCAACAGCT-ACATTCGCGGCACCA 3395 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || || | || || || || ||||| ||||| || |||| ||| || || || | Sbjct 3396 ACGGCTCCTCCAACGGCATCATCCCCATGCTGCGCGTGTTCAACGACACGGCCCGGTACG 3455 Query 104580 TAAATCAAGCTG--GGC-GTCGAAAGGG-ATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 | | || | | ||| || ||||| | || |||| |||| || ||||| |||||| Sbjct 3456 TGGACCAGGGCGGCGGCAAGCGCAAGGGCAGCT-TCGCCATCTACCTCGAGCCCTGGCAC 3514 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG- 104694 || || | | |||||||| || |||| ||||| || |||| | || | ||| Sbjct 3515 GCCGACGTGTTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAACGA-GCTGCACCGTGC 3573 Query 104695 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754 |||||| || |||| ||| || ||| | || || || ||||||||| | || |||| | Sbjct 3574 CCGCGACCTGTTCTACGCGCTGTGGGTGCCCGACCTGTTCATGAAGCGCGTGGAGGCCAA 3633 Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTG 104813 ||||| ||| | | || || || || |||| || || |||| ||| ||| | ||| | Sbjct 3634 CGGCAAGTGGAGTTTGTTCTGCCCCAACGAGGCCCCCGGGCTCTACGAGTGCTG-GGGGG 3692 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACGGT 104871 | |||||||| ||| ||| ||||||||| || || | ||| | || ||| | Sbjct 3693 ACGAGTTTGAGAGCCTCTACGACAAGTACGAGCGCGAGGGCC--GCGCCCGCAAGACCAT 3750 Query 104872 ----GC-CAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926 || |||| || ||||| || || || | | || | |||||| || Sbjct 3751 CAACGCGCAGCAGC-----TGTGGTTCGCCATCCTGGACGCGCAGATCGAGACGGGCGTG 3805 Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986 || | |||||| ||||| ||||| |||| ||| || || |||| | || Sbjct 3806 CCCTTCATGCTCTACAAGGACGCGGCCAACCGCAAGTCCAACCAGCAGAACCTCGG---C 3862 Query 104987 ATCAAGAGTTC---CAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG 105043 | || | || ||| || || || | |||| | || | || ||| | Sbjct 3863 ACCATCCGCTCCAGCAACCTGTGCTGCGAGGTGATGGAGTACACGTCCCCCGACGAGGTG 3922 Query 105044 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA 105103 || ||||| ||||| || || | || || ||||||| ||||| ||| | Sbjct 3923 GCCGTGTGCAACCTGGCCTCCGTGGCGCTGCCCAAGTTCGTGGA-----CGACGGCG-TG 3976 Query 105104 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163 || || || | |||||| |||| || || || || ||| ||||| |||| || Sbjct 3977 TTCGACTACCAGAAACTCTACGAGGTCACCAAGGTGGTGACCCGCAACCTCAACAAGGTC 4036 Query 105164 ATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 105223 || || || | |||||||| | || || || || || ||| | ||||| || Sbjct 4037 ATCGACGTCAACTACTACCCCGTGGCCGAGGCGCGCAAGTCCAACATGCGCCACCGCCCC 4096 Query 105224 ATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGAT 105283 || || |||| || ||||| |||||||| | ||||| || | |||| || || Sbjct 4097 ATCGGCATCGGCGTCCAGGGCCTCGCGGACGCCTTCATCCTCATGAACTACGCGTTCGAG 4156 Query 105284 TCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTT 105343 ||| | || || |||| | ||| || ||||| || || ||||||| | Sbjct 4157 AGCGAGCAGGCCCGCGAGCTCAACAAGAACATCTTCGAGACGATCTACTACGCCGCCGTC 4216 Query 105344 GAGGCGAGTTCA--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 105401 ||| | || || ||| | || ||| || || || || || || |||| || | Sbjct 4217 GAGAC--GTCCATGGAGATTGCCAAGGAGCTCGGCCCCTACGAGACGTTCCAGGGCTCGC 4274 Query 105402 CAGCTTCA-CAAGGGGTGCTT-CAATTTGATATGTGGGAAGGTGA----GACCAAGCTTC 105455 | || || ||||||| ||| || || || ||||||| || | | || | || Sbjct 4275 CGGC--CAGCAAGGGGATCTTCCAGTTCGACATGTGGG-GCGTCACCCCGTCCTCGGGTC 4331 Query 105456 ACTACGACTGGGAAGCTCTCAAG--GAACG-CATCAAGGAGAAGGGTCTTCGTAACAGTC 105512 || |||||| || |||||| ||||| ||| | | |||||||| ||| | Sbjct 4332 TCTGGAACTGGGCGGCGCTCAAGGAGAACGTGGTCA---AACACGGTCTTCGCAACTCGC 4388 Query 105513 TCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCT 105572 | || |||| || ||||| || || ||||| || || ||| | || || || || | | Sbjct 4389 TGCTGGTGGCCCCCATGCCCACGGCTTCCACGGCCCAGATCCTAGGCAACAACGAGTCCA 4448 Query 105573 TTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTG 105632 | || ||||||||| | ||||| || | | || || || ||||| ||| | Sbjct 4449 TCGAGCCCTACACGTCCAACATGTACAACCGCCGTGTGCTGGCCGGTGAGTTCACGATCG 4508 Query 105633 TCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGG 105692 | |||||| | || || | || |||| ||| | || ||||| | || || Sbjct 4509 TGAACAAGTACCTGATGAAGGAGCTCATTGAGCTGGGCATCTGGACACCCGACGTGCGCA 4568 Query 105693 ATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTA 105752 ||| || |||| | || || ||| | || || | || || || || | | | Sbjct 4569 ATCAGATCCTGAACGACGGCGGCTCCGTGCAGAAGGTGAAGGCCATCCCCGATCACGTCA 4628 Query 105753 AGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAG 105812 || || |||| || || ||||| |||||| ||||| || | ||| || | || | Sbjct 4629 AGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGAAGGCAGTACTGGACTTGTCGGCCG 4688 Query 105813 ATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACGA 105872 | || ||| || |||| || ||||| | || || ||| | || || | Sbjct 4689 ACCGCGGTGCCTACATTTGCCAGAGTCAGTCGCTCAACATCCACATCGCCGACCCGACCA 4748 Query 105873 TGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGT 105932 | ||||||| | || |||||| | ||| ||||||||||| ||||| || || |||| Sbjct 4749 TCAGCAAGCTCACGTCGATGCACTTCTACGCCTGGAAGAAGGGGCTCAAGACCGGCATGT 4808 Query 105933 ATTAC 105937 | ||| Sbjct 4809 ACTAC 4813 >seq4292 Length=2137 Score = 111 bits (122), Expect = 2e-19 Identities = 188/270 (70%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| || | ||| || ||||| | | |||||| | || || | |||||| | Sbjct 311 CTCATTGATACGTACATCAAGGACGCCGTGGAGAAGGACCACCTGCTGCGCGCCATCGAG 370 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAA---G 94788 || | ||||| | | ||||||||| | ||||| | ||||||| || | | Sbjct 371 ACGATCCCGTGCGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGTGTG 430 Query 94789 TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 94847 ||| ||| || | ||||| || | || || || || ||||| || |||||||| Sbjct 431 TCGTCGTACC----CGGAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTTCTTCTC 486 Query 94848 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 94907 || ||||||||| | || | |||||||||||||| || |||||||| || || |||| Sbjct 487 GGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTT 546 Query 94908 CTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||| |||||||| ||| ||||||||||| Sbjct 547 CTCGAACGAGCTGATCAGCCGTGACGAGGG 576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583218681279480