Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq758 165 2e-35 seq4473 89.7 2e-12 seq4461 89.7 2e-12 >seq758 Length=17183 Score = 165 bits (182), Expect = 2e-35 Identities = 503/774 (65%), Gaps = 5/774 (1%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| || || || || ||||| | || || ||| || || || || || || | Sbjct 5886 CCCGAGGAGATCTCGTCCATGGTGCTTGTCAAGATGCGAGAGATCGCCGAGGCTTACATC 5827 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 ||| | ||| | |||| || | || || ||||| ||||| || ||| | ||||| Sbjct 5826 GGTAAGCAAGTGAAGAATGCCGTGGTGACGGTCCCAGCGTATTTCAACGATTCGCAGCGC 5767 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || || || || || || ||| | || || || | || || ||||| Sbjct 5766 CAAGCCACGAAGGACGCCGGGGCTATCGCTGGGCTGAACGTGCTGCGTATCATCAATGAG 5707 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 || || ||||| || ||||| || ||||| || || | | | | || | || | Sbjct 5706 CCGACCGCTGCTGCCATTGCGTACGGGCTGGACAAGAAGGGCGGT---GAGCACAACGTG 5650 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || || |||||| | || || || || |||||||| || || || || ||||||| || Sbjct 5649 CTGATCTTTGATCTGGGAGGCGGGACGTTTGATGTCTCGCTGCTTACGATTGAAGAAGGC 5590 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || || || || || || || || ||||| ||||| ||||| ||||| ||||||||| Sbjct 5589 ATCTTCGAGGTGAAGGCGACGGCGGGCGATACTCATCTGGGTGGCGAAGACTTTGATAAT 5530 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGAT 349951 ||||| || | || || | || || ||||| || | | ||| | || Sbjct 5529 CGTCTTGTAGAGTTCTTCGTCACCGAGTTCAAGCGCAAATACCACAAGGATCTGACAGTG 5470 Query 349952 AATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCA 350011 || | | || |||||||| || | || |||| || || || |||||| | | || Sbjct 5469 AACTCACGTGCGATGCGTCGTCTCCGTACAGCGTCCGAGCGCGCGAAGCGTACTCTGTCC 5410 Query 350012 TCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCA 350071 || | | ||| | | | || || ||||| || || |||| |||||| || Sbjct 5409 ACTTCGGCGCAAGCGTACCTGGAGATCGATTCGCTGTTAGACGGCATCGATTTCAACTCG 5350 Query 350072 TCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGAT 350131 | ||||| |||||||| ||||| || | || | || | ||| | || ||| || Sbjct 5349 ACCATTACTCGTGCTCGATTTGAGGATCTCTGCAACGAGTTCTTTCGCAAGACTATGAAT 5290 Query 350132 CCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTT 350191 ||||||| | || | || | || |||| || || ||| | | || || || Sbjct 5289 CCTGTGGCGCAGGTTCTGCGCGACTCCAAGCTGTCGAAGAACCAGGTGAACGAGGTGGTC 5230 Query 350192 TTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAAT 350251 || || || || || || || || || || || || ||||| | || || || ||| Sbjct 5229 TTGGTCGGAGGGTCGACTCGCATCCCGAAGGTGCAGCAGTTGTTGATGGACTTCTTCAAT 5170 Query 350252 GGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGC 350304 ||||| || | ||| || || || ||||| |||||||| || || || ||||| Sbjct 5169 GGCAAGGAGCTGTTCAAG-TCGATCAATCCTGATGAAGCAGTCGCCTACGGTGC 5117 >seq4473 Length=1535 Score = 89.7 bits (98), Expect = 2e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 1083 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 1024 Query 74548 TCGGGCA 74554 ||||||| Sbjct 1023 TCGGGCA 1017 >seq4461 Length=2174 Score = 89.7 bits (98), Expect = 2e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 1090 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 1031 Query 74548 TCGGGCA 74554 ||||||| Sbjct 1030 TCGGGCA 1024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515142244183931