Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq476 334 8e-87 seq457 131 2e-25 seq164 118 1e-21 >seq476 Length=26050 Score = 334 bits (370), Expect = 8e-87 Identities = 553/778 (71%), Gaps = 20/778 (3%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTACGA 53253 |||||||| || |||| |||||| | |||| | || || | | ||||||||||| Sbjct 3113 ATGCGCGTGGCGCTGGGCATCCACAAGGCCGACATCCAGGCCGCGCTG-GAGACGTACGA 3171 Query 53254 CTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAA 53313 | ||| || |||| ||| |||||||| ||||| || ||||| ||||| || ||| Sbjct 3172 GCTCATGTCGCAGAAGTTCTTCACGCACGCGACGCCGACGCTGTTTAACGCCGGAACGCC 3231 Query 53314 TCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCAT 53373 | || ||| |||| ||||||||| |||| ||| |||| ||||| ||||| || || Sbjct 3232 GCGTCCGCAGCTGTCCTCCTGCTTCCTATTGGCCATGCAGGACGACTCCATCGAGGGTAT 3291 Query 53374 CTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCA 53433 ||| || ||||||||| |||| ||| ||||||||||||| |||| |||||||| ||| Sbjct 3292 CTATGACACGCTCAAGCAGTGCGCCTGCATCTCCAAGTGGGCGGGGGGTATCGGCATCAG 3351 Query 53434 C-TGCTCGAACGTCCGTGCGAACGGCA-CACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491 | ||| | ||| | ||||| | | || | || || || || |||||| | || | Sbjct 3352 CATGCAC-AACATTCGTGCCACCAACAGCTACATTCGCGGC-ACCAACGGCTCCTCCAAC 3409 Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551 || ||| | || ||||| ||||| |||||| |||||||||||||||| ||||||| || Sbjct 3410 GGCATCATCCCCATGCTGCGCGTGTTCAACGACACGGCCCGGTACGTGGACCAGGGCGGC 3469 Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 || ||||||||||| |||||||||||||||||||| |||||||||||| | | ||| Sbjct 3470 GGCAAGCGCAAGGGCAGCTTCGCCATCTACCTCGAGCCCTGGCACGCCGACGTGTTCGAG 3529 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTG---CCGTGACCTGTT- 53667 || || || ||||| ||| || || | | ||| ||| | | ||| |||||||| Sbjct 3530 TTCCTGGACCTGCGCAAGAACCACGG---CAACGAGCTGCACCGTGCCCGCGACCTGTTC 3586 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727 ||| || |||||| | || ||||| |||||| | |||||| ||| ||||| Sbjct 3587 TAC-GCGCTGTGGGTGCCCGACCTGTTCATGAAGCGCGTGGAGGCCAACGGCAAGTGGAG 3645 Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACG 53786 || | ||||| |||||| |||||| ||| | | ||| || || || |||||| | | Sbjct 3646 TTTGTTCTGCCCCAACGAGGCCCCCGGGCTCTACGAGTG-CTGGGGGGACGAGTTTGA-G 3703 Query 53787 AG-ATGTATCGGACGTACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGA 53844 || | || | ||||| || | |||||||| | |||| |||| |||| | Sbjct 3704 AGCCTCTACGACAAGTACG-AGCGCGAGGGCCGCGCCCGCAAGACCATCAACGCGCAGCA 3762 Query 53845 GGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAA 53904 | | ||| || ||||| | ||| | |||||||| ||| | |||| |||||| Sbjct 3763 GCTGTGGTTCGCCATCCTGGACGCGCAGATCGAGACGGGCGTGCCCTTCATGCTCTACAA 3822 Query 53905 GGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 ||| ||| |||| ||| ||||||| ||||| ||||| |||| || |||||| Sbjct 3823 GGACGCGGCCAACCGCAAGTCCAACCAGCAGAACCTCGGCACCATCCGCTCCAGCAAC 3880 Score = 210 bits (232), Expect = 2e-49 Identities = 554/830 (67%), Gaps = 57/830 (7%) Strand=Plus/Plus Query 55127 GTTGTGACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCG 55186 || ||||| || ||||| ||| |||||||||| || |||||||| | | |||| Sbjct 4010 GTGGTGACCCGCAACCTCAACAAGGTCATCGACGTCAACTACTACCCCGTGGCCGAGGCG 4069 Query 55187 CGCAAGTCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATC 55246 |||||||||||| | || ||||| ||||||| |||||| || |||||| | || ||| | Sbjct 4070 CGCAAGTCCAACATGCGCCACCGCCCCATCGGCATCGGCGTCCAGGGCCTCGCGGACGCC 4129 Query 55247 TTCATGATGCTCGGATTGCCC-TTCGACTCGGAACCTGCTCGAGAAATTAACCAGGACAT 55305 ||||| | | | | | | | ||||| || | || || || | ||| || |||| Sbjct 4130 TTCATCCTCAT-GAACTACGCGTTCGAGAGCGAGCAGGCCCGCGAGCTCAACAAGAACAT 4188 Query 55306 CTTC-AGTCGCATCTACTTTGCAGCGCTCGAGGAGTCG-TGTCATCTGGCTATGAGCGAG 55363 |||| || || ||||||| || || ||||| ||| || || | | |||| | Sbjct 4189 CTTCGAGACG-ATCTACTACGCCGCCGTCGAGACGTCCATGGAGATTGCCAAGGAGCTCG 4247 Query 55364 GGGACCTACGAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTA 55423 | ||||||||||||||| | ||||| || |||||| | |||||||||| | Sbjct 4248 GCC-CCTACGAGACGTTCCAGGGCTCGCCGGCCAGCAAGGGGATCTTCCAGTTCGACATG 4306 Query 55424 TGGGGCAAGTCTGACCCCAT------GTTT---GA-------------CAAGTTGAAGCA 55461 |||||| ||| ||||| | || | || |||| ||| Sbjct 4307 TGGGGC--GTC--ACCCCGTCCTCGGGTCTCTGGAACTGGGCGGCGCTCAAGGAGAACGT 4362 Query 55462 TGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTC 55521 | || ||| || || |||||||| ||||| ||||| || ||||| || || || Sbjct 4363 GGTCAAACAC------GGTCTTCGCAACTCGCTGCTGGTGGCCCCCATGCCCACGGCTTC 4416 Query 55522 GACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCT 55581 ||||| |||||| | |||||||||||| | ||||||| |||||| ||||||| ||| Sbjct 4417 CACGGCCCAGATCCTAGGCAACAACGAGTCCATCGAGCCCTACACGTCCAACATGTACAA 4476 Query 55582 GCGCCGGACCCTAGCAGGTGAGTTTGTCATGATC---AACAAGCACCTCGTCAAGGACCT 55638 ||||| || || ||||||| ||| |||| |||||| |||| | ||||| || Sbjct 4477 CCGCCGTGTGCTGGCCGGTGAGT---TCACGATCGTGAACAAGTACCTGATGAAGGAGCT 4533 Query 55639 GCAGAAGATCAACAAGTGGA-ACCCGCAGATC-AAGACGGATATTGTGCGGAACGGGGGG 55696 || | || |||| ||||| | | | | ||| || || |||| || Sbjct 4534 CATTGAGCTGGGCATCTGGACACCCGACGTGCGCAATCAGATCCTGAACG--ACGGCGGC 4591 Query 55697 TCCGTCCAGAATCTGGAG---ATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGG 55753 ||||| ||||| || || || || | ||||||||| ||| |||||||||| Sbjct 4592 TCCGTGCAGAAGGTGAAGGCCATCCCCGATCACGTCAAGGAGAAGTACAAGACGGTGTGG 4651 Query 55754 GAGATTCCACAGAAG--AGT-CTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGAC 55810 ||||| |||||| ||| ||| ||| || || || || ||||| ||||| | Sbjct 4652 GAGATCAAGCAGAAGGCAGTACTG---GACTTGTCGGCCGACCGCGGTGCCTACATTTGC 4708 Query 55811 CAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATG 55870 ||| ||||| || |||||| ||| | | || | | |||| | | |||||| Sbjct 4709 CAGAGTCAGTCGCTCAACATCCACATCGCCGACCCGACCATCAGCAAGCTCACGTCGATG 4768 Query 55871 CACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCG 55920 ||||| |||| ||||||||||| |||||||| || |||||||| |||| Sbjct 4769 CACTTCTACGCCTGGAAGAAGGGGCTCAAGACCGGCATGTACTACATGCG 4818 >seq457 Length=26735 Score = 131 bits (144), Expect = 2e-25 Identities = 246/359 (69%), Gaps = 2/359 (1%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || ||||| || || |||||||| || | |||||| | ||| || ||| | Sbjct 14898 CCTGTTCCGATACCGTCACTGCCGTTGACAAGCACCATCGGGATAATTGGAATGTACCAT 14957 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACG-TATTTCAAAACGGAATTGTCAGCCGG 151994 |||||||| | | || ||||| || ||| | || || | ||| |||||| || Sbjct 14958 TCCGGCTCGATCGACTGGCCGTCTTCG-TCAAGATACTTAAGCACGTCGTTGTCAAGTGG 15016 Query 151995 ATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGC 152054 |||| | ||||| ||||| | | ||| ||||| || || || | ||||||||| Sbjct 15017 ATCGTAGATCCGGCGAGTAAGCTGTTCCAAGTTGGTGAAAATATAACGTGCGCTGGCCGC 15076 Query 152055 ATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTT 152114 ||||||||| || || ||||| |||||||| || ||| ||||||| || || Sbjct 15077 ATCCTTGCCGCCCATCAAACGCGTACCAAACTGACCGATCGGCGACAGGAGGTGGACATT 15136 Query 152115 GTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACC 152174 |||| || || |||| ||| |||| || ||||| || |||| |||| || || Sbjct 15137 GTTGCTTCCAACAAAATCCTGGGCCATGTTTACAATACAACCTTGCAAACTCTGCTCGCC 15196 Query 152175 GTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCG 152233 |||||| ||||| | ||||| | || || || |||| ||||||||||| | |||| Sbjct 15197 GTGGTGGTACGCAGAGTGCTCGGAGACATAGCCAGCCAGTTGCGCCACCTTTAGTTCCG 15255 Score = 120 bits (132), Expect = 3e-22 Identities = 241/352 (68%), Gaps = 4/352 (1%) Strand=Plus/Plus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || ||||||||||| || || || | || | |||||| | | |||| ||| | Sbjct 14898 CCTGTTCCGATACCGTCACTGCCGTTGACAAGCACCATCGGGATAATTGGAATGTACCAT 14957 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACG-TACTTGAGCACCGCATTGTCACTCGG 117270 || ||||| | | | | ||||| || || | | ||||| ||||| | |||||| || Sbjct 14958 TCCGGCTCGATCGACTGGCCGTCTTC-GTCAAGATACTTAAGCACGTCGTTGTCAAGTGG 15016 Query 117271 ATCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGC 117330 |||| | || || | || | | | |||||||| ||||| | ||| || || Sbjct 15017 ATCGTAGATCCGGCGAGTAAGCTGTTCCAAGTTGGTGAAAATATAACGTGCGCTGGCCGC 15076 Query 117331 ATCCTTGCC-ACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGT 117389 ||||||||| ||| ||| ||||||||| || || || ||||| || ||||| | | Sbjct 15077 ATCCTTGCCGCCCATCAA-ACGCGTACCAAACTGACCGATCGGCGACAGGAGGTGGACAT 15135 Query 117390 TGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCAC 117449 ||||| || ||||| | || |||| ||| ||||| |||||| | ||| ||| | Sbjct 15136 TGTTGCTTCCAACAAAATCCTGGGCCATGTTTACAATACAACCTTGCAAACTCTGCTCGC 15195 Query 117450 CATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTT 117501 | ||||| ||||| | ||||| | || ||||| ||||| || |||||||| Sbjct 15196 CGTGGTGGTACGCAGAGTGCTCGGAGACATAGCCAGCCAGTTGCGCCACCTT 15247 >seq164 Length=75961 Score = 118 bits (130), Expect = 1e-21 Identities = 190/273 (70%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 |||||| || || || | ||| || ||||||||||| || || || ||||| ||||| Sbjct 15150 CGTGAAAATATAACGAGGGCTTGCTGCATCCTTGCCTCCCTGCAAACGAGTTCCGAACTG 15209 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || || || | || || |||||||| | |||||||||| ||| |||| || || Sbjct 15210 GCCGGACGGATACAGCAGCGGAAGGTTGTTAGAACCCACGAAATCCTGCGCCATGTTTAC 15269 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 ||| || |||| | || |||||||| || ||||| || || | ||| || Sbjct 15270 AATTGTAGAGTGCAATGAAGTCTCGCCGTGGTGGTAGGCCGTATGTTCACTGCAGTAACC 15329 Query 152208 CGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCAC 152267 || | |||||||||||||| || ||||||| || ||| ||||| || | | ||| Sbjct 15330 AGCAAGCTGCGCCACCTTCACCTCGCTCGTCAGCTTGCGCTTCAGACAAGCAAATAGCAC 15389 Query 152268 CTTGCGCTGGGATGGTTTCAAACCGTCCACCAC 152300 ||| ||||| || ||| | ||| || ||||| Sbjct 15390 CTTACGCTGTGAGATTTTGAGACCATCGACCAC 15422 Score = 107 bits (118), Expect = 2e-18 Identities = 177/250 (71%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCC-ACCAGCAAGACGCGTACCGAATTG 117363 |||||||| ||||||| |||||| ||||||||||| || |||| ||| || ||||| || Sbjct 15151 GTGAAAATATAACGAGGGCTTGCTGCATCCTTGCCTCCCTGCAA-ACGAGTTCCGAACTG 15209 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 || ||| | || || |||||||| | ||||| || | || |||| ||| || Sbjct 15210 GCCGGACGGATACAGCAGCGGAAGGTTGTTAGAACCCACGAAATCCTGCGCCATGTTTAC 15269 Query 117424 AATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTC-CGCCACGTAGC 117482 ||| ||| || | | ||| || ||||| || ||||| || || | || ||| | Sbjct 15270 AATTGTAGAGTGCAATGAAGTCTCGCCGTGGTGGTAGGCCGTATGTTCACTGCA-GTAAC 15328 Query 117483 CCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCA 117542 | || ||||| |||||||||| || |||||| || ||| || || ||| | | || Sbjct 15329 CAGCAAGCTGCGCCACCTTCACCTCGCTCGTCAGCTTGCGCTTCAGACAAGCAAATAGCA 15388 Query 117543 CCTTGCGCTG 117552 |||| ||||| Sbjct 15389 CCTTACGCTG 15398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547176484164600