Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq476 349 4e-91 seq45 140 4e-28 seq4292 132 5e-26 seq6 125 8e-24 seq745 123 3e-23 seq164 111 2e-19 >seq476 Length=26050 Score = 349 bits (386), Expect = 4e-91 Identities = 1079/1648 (65%), Gaps = 40/1648 (2%) Strand=Plus/Minus Query 80036 GCGTCCGCAGAT--AGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCAT 80093 |||||||| || |||||||||| |||||||| |||||||||||| |||| | |||||| Sbjct 4825 GCGTCCGCGCATGTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCAT 4766 Query 80094 AGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACA 80153 || ||||||| | || |||| | ||| |||||| || |||||| ||| || Sbjct 4765 CGACGTGAGCTTGCTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCA 4706 Query 80154 GATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATAC 80213 ||| | || || || || |||| || || | | || ||| || || ||||| || Sbjct 4705 AATGTAGGCACCGCGGTCGGCCGACAAGTCCAGTACTGCCTTCTGCTTGATCTCCCACAC 4646 Query 80214 -----TGTACGATACACCTTACGAAGCTCCTCTGGAATGTCC---AGATTTTGCACACTG 80265 ||||| | | |||| || | | || || ||| || | || ||||| | Sbjct 4645 CGTCTTGTAC--TTCTCCTT--GACG-TGATCGGGGATGGCCTTCACCTTCTGCACGGAG 4591 Query 80266 CCACCGTCCTTTACAATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGA 80325 || ||||| || | || ||||| || || | ||||||| || |||| || Sbjct 4590 CCGCCGTCGTTCAGGATCTGATTGCGCACGTCGGGTGTCCAGATGCCCAGCTCAATGAGC 4531 Query 80326 TCTTTCACAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATAC 80385 || |||| |||| |||||| | || ||||| || || || || || ||| Sbjct 4530 TCCTTCATCAGGTACTTGTTCACGATCGTGAACTCACCGGCCAGCACACGGCGGTTGTAC 4471 Query 80386 AGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCC 80445 | ||| | ||||| ||||| | | ||||||||| || |||||||| |||||| ||| Sbjct 4470 ATGTTGGACGTGTAGGGCTCGATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAAGCC 4411 Query 80446 GTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTT---CTTGATATCCTCG 80502 || ||||| ||| | |||| ||| || || || || ||||| || | | | |||| | Sbjct 4410 GTGGGCATGGGGGCCACCAGCAGCGAGTTGCGAAGACCGTGTTTGACCACGTTCTCCTTG 4351 Query 80503 CGCAAATCTGACCAAAA--ATCAACCCCA--ACGCTGTGAC--CCCACATGTCGTGCTGC 80556 || | | ||| | |||| | ||| ||||| ||||||||||| ||| Sbjct 4350 AGCG---CCGCCCAGTTCCAGAGACCCGAGGACGGGGTGACGCCCCACATGTCGAACTGG 4294 Query 80557 AAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCC 80616 ||||| |||| ||||| || ||| |||||||||||| ||||| | |||||| Sbjct 4293 AAGATCCCCTTGCTGGCCGGCGAGCCCTGGAACGTCTCGTAGGGGCCGAGCTCCTTGGCA 4234 Query 80617 AGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACA 80676 | ||| ||| | | ||| |||| || || ||| |||| | |||||| | Sbjct 4233 ATCTCCATGGACGTCTCGACGGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTGAGC 4174 Query 80677 CCGCGCGCCTG-TGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCC 80735 |||| ||||| | | || ||||||| || ||| | ||||| |||| || ||||| Sbjct 4173 TCGCGGGCCTGCTCGCTC-TCGAACGCGTAGTTCATGAGGATGAAGGCGTCCGCGAGGCC 4115 Query 80736 CTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA-TCGCTCGGCCTCCGGAATTG 80794 ||| ||||||||| |||| |||||||||||| |||| || | || | ||||| | | | Sbjct 4114 CTGGACGCCGATGCCGATGGGGCGGTGGCGCATGTTGGACTTGCGC-GCCTCGGCCACGG 4056 Query 80795 GGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCAT 80854 |||| |||| |||||||| ||| |||||||| || || ||| || || || | Sbjct 4055 GGTAGTAGTTGACGTCGATGACCTTGTTGAGGTTGCGGGTCACCACCTTGGTGACCTCGT 3996 Query 80855 GAAGTTTCTGAAAGTCGAATTGGTTCCCCTTCACAAATGCCGGAAGGCTCAGGGACGCCA 80914 |||||||| ||||||| | | | ||| || || || || ||| |||| Sbjct 3995 AGAGTTTCTGGTAGTCGAACACGCCGTCGTCCACGAACTTGGGCAGCGCCACGGAGGCCA 3936 Query 80915 GATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAG 80974 | ||||||||||||||||| || | || |||| | | || ||||| || Sbjct 3935 GGTTGCACACGGCCACCTCGTCGGGGGACGTGTACTCCATCACCTCGCAGCACAGGTTGC 3876 Query 80975 AAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGC 81034 || || || || ||||| | |||||| |||||| |||| |||||||||||| Sbjct 3875 TGGAGCGGATGGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCCGCGTCCTTGTAGA 3816 Query 81035 ACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCG 81094 |||| | || || ||||||| ||| | | ||||||||| ||| | || ||| Sbjct 3815 GCATGAAGGGCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGCG 3756 Query 81095 CCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCGTCGAAC 81153 | |||| ||||||| ||| ||| | | |||||| |||| || || || ||| Sbjct 3755 CGTTGATGGTCTTGCGGGCGCGGCCCTCGCGCTCGTACTTGTCGTAGAGGCTC-TCAAAC 3697 Query 81154 TTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCG 81213 | | | || || ||| | ||| |||||| ||||| | || ||| | | Sbjct 3696 TCGTCCCCCCAGCACTCGTAGAGCCCGGGGGCCTCGTTGGGGCAGAACAAACTCCACTTG 3637 Query 81214 GTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCG 81273 || | ||| || ||||||||| ||| || | ||| || ||| |||||||||| Sbjct 3636 CCGTTGGCCTCCACGCGCTTCATGAACAGGTCGGGCACCCACAGCGCGTAGAACAGGTCG 3577 Query 81274 CGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCC 81333 ||| || | ||| | || ||||| ||||| || || || || | | ||| Sbjct 3576 CGGGCACGGTGCAGCTCGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAACACGTCG 3517 Query 81334 GCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACCCTGGTTG 81390 || ||||| ||||| || || | ||||| |||||||| | ||| ||||||| Sbjct 3516 GCGTGCCAGGGCTCGAGGTAGATGGCGAAGCTGCCCTTGCGCTTGCCGCCGCCCTGGTCC 3457 Query 81391 ACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCG 81450 ||||| ||||| || |||| || || |||| ||| |||||||| || | || ||| Sbjct 3456 ACGTACCGGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCGTTGGAGGAGCCG 3397 Query 81451 TTCGTACCCACGATACGCGACCCCT--TGGCGCGCACCTTGCTGATTGAAAGACCGATGC 81508 || || || ||| | | | | |||| || | ||| || | ||||| | Sbjct 3396 TTGGT-GCCGCGA-ATGTAGCTGTTGGTGGCACGAATGTTGTGCATGCTGATGCCGATAC 3339 Query 81509 CACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGC 81568 | || | |||||| || || || ||| | || | || ||||| || ||||||||| Sbjct 3338 CCCCCGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATACCCTCGATGG 3279 Query 81569 TATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCAT 81628 || | | |||| | | | ||| ||| |||| ||| || | | ||||| | Sbjct 3278 AGTCGTCCTGCATGGCCAATAGGAAGCAGGAGGACAGCTGCGGACGCGGCGTTCCGGCGT 3219 Query 81629 TGAACAGTGTTGGGGTCGCGTGAATGAA 81656 | ||||| || || |||||||| |||| Sbjct 3218 TAAACAGCGTCGGCGTCGCGTGCGTGAA 3191 >seq45 Length=78880 Score = 140 bits (154), Expect = 4e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| ||||||||||| || || || || || ||| | Sbjct 57059 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 57118 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | || ||||| ||||| || ||||||||||| || || || |||||| Sbjct 57119 GACTCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAG 57178 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || ||||| ||||| || ||||| | || || || ||| ||||| || Sbjct 57179 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGC-GACTACAA 57237 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| || |||||||| || || | |||||||| || ||| Sbjct 57238 CATCCAGAAGGAGTCGACTCTTCACCTGGTGCTTCGTCTTCGTGGCGGA 57286 Score = 125 bits (138), Expect = 8e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| ||||||||||| || || || || || ||| | Sbjct 56831 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 56890 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | || ||||| ||||| || ||||||||||| || || || |||||| Sbjct 56891 GACTCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAG 56950 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || ||||| ||||| || ||||| | || || | ||| ||||| || Sbjct 56951 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACGTTGAGC-GACTACAA 57009 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||||| || || | || || || ||||| Sbjct 57010 CATCCAGAAGGAGTCGACCCTTCACCTGGTGCTTCGCCTGCGTGGTGG 57057 >seq4292 Length=2137 Score = 132 bits (146), Expect = 5e-26 Identities = 351/533 (66%), Gaps = 5/533 (1%) Strand=Plus/Plus Query 64319 TGTGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTGGACGGTCGAGGAGGTTGATCTCG 64378 ||||| || | |||||||| || || |||||||||| ||||||| | || || | Sbjct 45 TGTGGCAGATGTACAAGAAGGCGGAGGCCTCGTTCTGGACGGCCGAGGAGCTGGACCTGG 104 Query 64379 CCAAGGATCTCAGCGACTGGGAAAACCTAAACTCACAG-GAACAGCACTTCATCAAGTTG 64437 | || |||| ||||||| ||||| | | ||| || | | |||||||||| Sbjct 105 TGCACGACCTCAAGGACTGGGCGAACCTGA-CGGACAACGAGCGGTTCTTCATCAAGCAC 163 Query 64438 GTCCTAGCATTCTTCGCATCAAGTGACGGAATTGTGTTTGAGAATTTGGACCTAAATTTT 64497 || || || |||||||| | || ||||| |||||| ||||| ||| | | || || Sbjct 164 GTGCTGGCGTTCTTCGCTGCGAGCGACGGTATTGTGAACGAGAACCTGGCCATGAACTTC 223 Query 64498 ACAAAGGATGTTCAGATCCCAGAGGCGCGGTCATTCTATGCGTATCAGGGATTTAACGAA 64557 | || || || ||| | || |||| || | ||||| | | ||| | ||| Sbjct 224 AGCAATGAAGTGCAGGTGCCCGAGGTCCGCTGCTTCTACGGCTTCCAGATCGCCATCGAG 283 Query 64558 AGTATTCATGGCGAGACGTATTCGCTCATGATTGACAAGTTTGTTCGGGATCCTGTCGAG 64617 | || || | |||| ||| ||||| | ||||| | || | ||| | || ||| Sbjct 284 AACATCCACGCCGAGGTGTACTCGCTGCTCATTGATACGTACATCAAGGACGCCGTGGAG 343 Query 64618 AAGGATGGACTGTTCAGGGCTATAGAGACTGTACCCGCTGTTACTAAAAAGGCTGAATGG 64677 ||||| ||| | | || || ||||| | || || | || || || | ||| Sbjct 344 AAGGACCACCTGCTGCGCGCCATCGAGACGATCCCGTGCGTGAAGAAGAAAGCGCACTGG 403 Query 64678 GCCATCCGGTGGATGAATC---GTGGGTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCC 64734 || || |||| | | ||| |||||||| ||||||| || || ||| Sbjct 404 GCGCTCAAGTGGTGCGACCCGCGTGTGTCGTCGTACCCGGAGCGTCTGCTGGCGTTCGCC 463 Query 64735 TGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGG 64794 ||||| || |||||||| || || || ||||| || || |||||||| || ||||| Sbjct 464 GCCGTGGAGGGCATTTTCTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGC 523 Query 64795 GGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGG 64847 ||||| ||||| || ||| || ||||||||||||||| || |||||||| Sbjct 524 GGCCTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGG 576 >seq6 Length=256829 Score = 125 bits (138), Expect = 8e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| || |||||||| || || || || || ||| | Sbjct 245955 ATGCAGATCTTCGTAAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 246014 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | || ||||| || ||||||||||||||||| || || || |||||| Sbjct 246015 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 246074 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || || ||||| ||||| || || || | || || || ||| ||||| || Sbjct 246075 CAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGC-GACTACAA 246133 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || ||||||| || ||||| Sbjct 246134 CATCCAGAAGGAGTCTACGCTGCACCTGGTGCTGCGTCTGCGTGGTGG 246181 >seq745 Length=17434 Score = 123 bits (136), Expect = 3e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| |||||||| ||||| || || |||||||| || || || || || ||| | Sbjct 11922 ATCATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCG 11981 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || ||||||| ||| | ||| ||||| |||||||||||||| || || || ||| Sbjct 11982 TCCGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGAC 12041 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| | || || || || ||||| |||||||| | || || || | ||||| Sbjct 12042 CAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTAC 12101 Query 27583 AATGTCCAAAAGG 27595 || |||| |||| Sbjct 12102 AACATCCAGAAGG 12114 >seq164 Length=75961 Score = 111 bits (122), Expect = 2e-19 Identities = 190/274 (69%), Gaps = 4/274 (1%) Strand=Plus/Minus Query 31978 GTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAAC 32037 |||| || || ||||| |||||||| |||||| ||| || || || ||| || Sbjct 15422 GTGGTCGATGGTCTCAAAATCTCACAGCGTAAGGTGCTATTTGCTTGTCTGAAGCGCAAG 15363 Query 32038 CTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAG--CAAACGGCCT 32095 ||| |||| || |||||||||||||||| | || ||| |||| | || ||||||| Sbjct 15362 CTGACGAGCGAGGTGAAGGTGGCGCAGCTTGCTGGTTACT--GCAGTGAACATACGGCCT 15305 Query 32096 ATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCG 32155 | |||||||||||| | || | || || ||||| ||| | || ||| | || || | Sbjct 15304 ACCACCACGGCGAGACTTCATTGCACTCTACAATTGTAAACATGGCGCAGGATTTCGTGG 15245 Query 32156 GTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTG 32215 || | || ||||| | || | || || || ||||| || || || | || | Sbjct 15244 GTTCTAACAACCTTCCGCTGCTGTATCCGTCCGGCCAGTTCGGAACTCGTTTGCAGGGAG 15185 Query 32216 GCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 |||||||||| || ||| | ||||| || ||||| Sbjct 15184 GCAAGGATGCAGCAAGCCCTCGTTATATTTTCAC 15151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570269216460240