Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1844 194 1e-44 seq4 107 2e-18 >seq1844 Length=5900 Score = 194 bits (214), Expect = 1e-44 Identities = 457/682 (67%), Gaps = 35/682 (5%) Strand=Plus/Plus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| ||| ||||| || || | || ||| || ||||| || ||||| | ||| Sbjct 1798 AGCTGCTTCTGGAGCGGCTCGACATGATTCAGATACACGTGGGCATCTCCAATAACGTGA 1857 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29983 ||||||||||| || | | || | || || || | || ||| || | | |||| Sbjct 1858 ACAAACTCTCCAGGCTTCAATCCAGCCACCTGCGCAACCAGTCGCGTAAGCAATGCGTAG 1917 Query 29984 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 30043 || ||||| || || || || || || |||||||| |||| | |||||| | ||| || Sbjct 1918 CTAGCGATATTGAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAG 1977 Query 30044 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATG 30103 || ||||| |||||| |||||| ||||| || | ||||||||| || || ||||| Sbjct 1978 GAAAGCTCGCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCAT- 2036 Query 30104 AGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTT 30159 | || || || || ||||| || ||| | |||||| | ||| ||||| Sbjct 2037 ---CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATGCGGCGGTCCGTCGGGTT 2093 Query 30160 GTTCCTGA---TGAGGT---CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTA 30213 | | | || || || | ||| ||||| ||||| ||| || | ||| Sbjct 2094 CGTGCGCAGCTTGTGGATAACCCCCGCG------AGCTGGTCCACGCCCTGGCCAGTGTA 2147 Query 30214 GTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGG 30273 || || |||||||||||||| || || ||||||| ||||||||| ||||| ||||| Sbjct 2148 ATCGGCATGCATGTCCGTGTACTTGGCGCCAAAATGCCGCCACTGGAAGCCGTAGACCGG 2207 Query 30274 TCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC-CTCTTGTCCAAAAAGTCTCTGGAAC 30332 ||| ||||| ||| | || | | || | ||||| | |||||| | | || | || Sbjct 2208 TCCGAGGTCGCCCACCTCTC-GCGCCTGCAGCCCTCGACTGTCCAGATACTCGCGCGACG 2266 Query 30333 CGTTGGCGTCCCAGATCTTTACCCCCTTCT----CAGAGAGCTCTTTGGAGTTTGTGGAC 30388 | ||| |||||||||| | | |||||| ||| ||| | | | | ||| Sbjct 2267 CATTGCCGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGAG----TGCGCGCTGGTGTCG 2322 Query 30389 CCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTG 30448 || |||| |||||||||||||||||| | ||| | ||| || || | |||||||||| Sbjct 2323 CCGCTGATGAACCACAGCAGCTCCTCGGCCACGCCGCGCCAGAACACGCGCTTGGTCGTG 2382 Query 30449 AGGAGGGGAAAC----TGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAA 30504 || || || ||| |||||| |||||| | ||| ||| | || || || |||| Sbjct 2383 AGCAGCGGGAACACGTTGTCCC-TGAGGCTGAACCGCATCTGCGCGCCGAAGACCGACAG 2441 Query 30505 GACTCCCGTGCCCGTCCTGTCT 30526 ||||| ||||| | |||| Sbjct 2442 CGTGCCCGTCCCCGTGCGGTCT 2463 >seq4 Length=136950 Score = 107 bits (118), Expect = 2e-18 Identities = 206/304 (68%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 49036 CCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTCGC 49095 |||||||| | || || ||||| | ||||||| | |||||| || | | ||| | Sbjct 14539 CCACCTCCTGCACCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTCCC 14598 Query 49096 CCCTCTCGACCCGAAAGGGGTCGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCCCC 49155 | | || || | ||| ||| | | ||| ||||| || ||||| | |||||| | Sbjct 14599 CGCGCTGCACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCCGC 14658 Query 49156 TGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCCGG 49215 |||||||| ||| | ||| || || || ||| || || || || || |||||||| | Sbjct 14659 GGTAGTCGGCGTCGATCACGCCCGCGCCCGTGTCGATGAACTTCTTGAGCGCCAGGCCAG 14718 Query 49216 ACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGGCCAGGTCCGTCTTTA 49275 | | || ||||| | ||||| ||| | ||||| || ||||||||||||| | Sbjct 14719 AGCGCGGCGCCACGCGCGCGTAGCAGCCGGCGGGCACGGCGACCACCAGGTCCGTCTTGA 14778 Query 49276 CCAGGGCCCTGTCGAAGGAGGGGACCACGACCGGGTGAGCGGCCGCCAGGTCGTAACCCG 49335 | ||| || || || | ||||| |||| | || ||||||| |||||| |||| Sbjct 14779 CGAGGCCCTTGCCGCCCGCGGGGATCACGGCGTCGTAGGCGGCCGACAGGTCCAGGCCCG 14838 Query 49336 CGGC 49339 |||| Sbjct 14839 CGGC 14842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406281792827484