Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq45 104 1e-17 >seq45 Length=78880 Score = 104 bits (114), Expect = 1e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | ||||| || ||||| |||||| || ||||| || || Sbjct 57285 CCGCCACGAAGACGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 57226 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| ||||| || || || || || || | |||||| ||||| ||||| Sbjct 57225 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 57166 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| || || || ||| | || | ||| |||||| Sbjct 57165 ATGCCCTCCTTGTCTTGGATTTTCTG-CTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 57107 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| || ||||| || ||||| | ||| ||||| || ||||||||| Sbjct 57106 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 57058 Score = 86.0 bits (94), Expect = 4e-12 Identities = 156/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TGAAAGTGTTC 34546 || || | ||||| || || || |||||| || ||||| || || | || ||| | Sbjct 57048 AGGCGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAACGTG--C 56991 Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606 | |||| ||||| || || || || || || | |||||| ||||| ||||| | |||| Sbjct 56990 GGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCT 56931 Query 34607 CCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACG 34665 |||||||| ||| || || || ||| | || | ||| |||||| |||| Sbjct 56930 CCTTGTCTTGGATTTTCTG-CTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGC 56872 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || ||||| || ||||| | ||| ||||| || |||||||| || Sbjct 56871 GTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATCTT 56828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314707440774041