Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq495 163 1e-35 >seq495 Length=27618 Score = 163 bits (180), Expect = 1e-35 Identities = 394/591 (67%), Gaps = 8/591 (1%) Strand=Plus/Plus Query 66150 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 66209 || |||||||| ||||||||||| || || || ||| | || || || | Sbjct 12677 CGTGTGGTGGAGATCTACGGCCCCGAGAGCTCTGGCAAGACGACGTTGGCGCTGAGCTGC 12736 Query 66210 GTGGCCAATGCCCAGAAGGCCGGTGGCAACG-CTGCCTA--CATCGACGCTGAGCACTCC 66266 | || | ||||||||| ||| ||| | |||| | |||||| |||||||| || Sbjct 12737 ATTGCTGAGGCCCAGAAGACCGAGGGCGGAGTCTGCGCATTCATCGATGCTGAGCATGCC 12796 Query 66267 CTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAG 66326 | ||| | | ||||||||||| ||||| || ||| ||||| || || ||| Sbjct 12797 ATTGACGCCCATTACGCCAAGGCTCTCGGCGTCGACATCGACGCGCTGTACGTCTCGCAG 12856 Query 66327 CCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTG 66386 || ||| | ||||| | || || ||||||| ||| ||| ||| ||| || | | || Sbjct 12857 CCCGACTCGGGCGAAGAAGCTCTTGAGATCGCCGACACGCTCATCAGGTCGGGAGCGGTG 12916 Query 66387 TCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGAC 66446 | |||| || | ||| |||||| || ||||||||||| || ||||| ||||| || Sbjct 12917 GACCTCGTGGTGCTGGACAGTGTGGCAGCTCTGGTGCCGCGAGCGGAGCTGGAAGGTGAA 12976 Query 66447 ATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTC 66506 || || ||| || | | ||||| ||||| |||||| ||||| |||| ||||| Sbjct 12977 ATGGGCGACCAGCAGATTGCGCTGCAGGCGCGACTCATGAGTCAGGCGCTGCGGAAGCTG 13036 Query 66507 ACCGGCACCATCTCCAGCACCAAC-ACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAA 66565 || || | | |||| ||||| | || | ||| | |||||| | ||| |||| Sbjct 13037 ACGGGGTCGCTGTCCAAGTCCAACTGCACT-ATTATCTTCCTGAACCAGATCCGCCAGAA 13095 Query 66566 GATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTT 66625 | | |||| | || ||| | ||| || | ||||||| || ||| | | Sbjct 13096 GGTTGGCA---TTATCTTCGGATCTCCTGAGGTGACGTCAGGCGGCACTGCCTTGCGCTA 13152 Query 66626 CTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGC 66685 ||||| || || || |||| | ||||| | | || |||||||| || ||| Sbjct 13153 TTACGCGTCTGTGCGGTTGGACATTCGTCGTAAGACGGCCATCAAGGAAGGTGACCAGGT 13212 Query 66686 TGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 66736 |||||||||| || ||||||||| | |||||||||||||||| |||| Sbjct 13213 TGTCGGCAACGAGACGGTGGTGAAGGTGGCCAAGAACAAGCTGGCCTCGCC 13263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240943034684100