Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1844 273 2e-68 >seq1844 Length=5900 Score = 273 bits (302), Expect = 2e-68 Identities = 481/697 (69%), Gaps = 19/697 (3%) Strand=Plus/Plus Query 6506 GGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAG 6565 |||||||| || || ||| ||||| || ||||| |||||| || ||||| || Sbjct 1774 GGGAACGGACGCGGTGTTCGAGTAAGCTGCTTCTGGAGCGGCTCGACATGATTCAGATAC 1833 Query 6566 ATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAG 6623 | || ||||| || | |||| | || | ||| ||||| ||| || | || || | Sbjct 1834 ACGTGGGCATCTCCAATAACGT--GAACAAACTCTCCAGGCTTCAATCCAGCCACCTGCG 1891 Query 6624 CGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGT 6683 | | || ||| |||| ||||| ||||| || ||||||||||| || | ||||||| Sbjct 1892 CAACCAGTCGCGTAAGCAATGCGTAGCTAGCGATATTGAACGGCACGCCAAGTCCCATGT 1951 Query 6684 CTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGA 6743 | |||| || || || | ||||||||| ||||| || | || |||||||| ||||||| Sbjct 1952 CGGCCGAGCGCTGGTACATCTGGCAGGAAAGCTCGCCGTCGGCCACGTAGAACTGGCAGA 2011 Query 6744 GGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCA 6803 |||||||||| |||||||||||| | ||||||| ||| |||||||| ||| || Sbjct 2012 ACATGTGGCACGGCGGGAGCGCCATCTCATTGAGATCCGCCGGATTCCACGCCGACAGCA 2071 Query 6804 CGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCG 6863 |||| | | ||| |||||| || ||| ||| || | ||||||||| Sbjct 2072 CGATGCGGCGGTCCGTCGGGTTCGTGCGCAGCTTGTGGATAACCCCCGCGAGCTGGTCCA 2131 Query 6864 CTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACT 6923 | ||||| || | || || || | | || |||| || ||||| || | ||||| Sbjct 2132 CGCCCTGGCCAGTGTAATCGGCATGCATGTCCGTGTACTTGGCGCCAAAATGCCGCCACT 2191 Query 6924 GGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCA 6983 |||| ||||||||||| || | ||||||| |||| || | | | ||| || |||||| Sbjct 2192 GGAAGCCGTAGACCGGTCCGAGGTCGCCCACCTCTCGCGCCTGCAGCCCTCGACTGTCCA 2251 Query 6984 GAAAGTCTCGAGACCCGTGAGCGTCCCAGATCT-----TCACCCCCCGGGA-CGAGAGCT 7037 || | || || ||| | | |||||||||| | || | | | | |||| || Sbjct 2252 GATACTCGCGCGACGCATTGCCGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGAGTGCG 2311 Query 7038 CCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGT 7097 | |||||| | || || | ||||||||||||||||||| ||||||| |||| Sbjct 2312 CGCTGGTGT------CGCCGCTGATGAACCACAGCAGCTCCTCGGCCACGCCGCGCCAGA 2365 Query 7098 ACACACGTTTCGTCGTCAGCAGCGGAAA---TTCGCCCCGAAGGTTGTATCGGGCCTGTG 7154 |||| || || ||||| |||||||| || | | ||| ||| || | || ||| | Sbjct 2366 ACACGCGCTTGGTCGTGAGCAGCGGGAACACGTTGTCCCTGAGGCTGAACCGCATCTGCG 2425 Query 7155 TGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTC 7191 |||||| || || || || |||||||| || ||||| Sbjct 2426 CGCCGAAGACCGACAGCGTGCCCGTCCCCGTGCGGTC 2462 Score = 273 bits (302), Expect = 2e-68 Identities = 481/697 (69%), Gaps = 19/697 (3%) Strand=Plus/Minus Query 34154 GACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCGG 34213 ||||| || |||||||| || || || || |||||| | ||| || | || ||| || Sbjct 2462 GACCGCACGGGGACGGGCACGCTGTCGGTCTTCGGCGCGCAGATGCGGTTCAGCCTCAGG 2403 Query 34214 GGCGAA---TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAG 34270 | | | || |||||||| ||||| || || |||| |||| ||||||| ||||||| Sbjct 2402 GACAACGTGTTCCCGCTGCTCACGACCAAGCGCGTGTTCTGGCGCGGCGTGGCCGAGGAG 2343 Query 34271 CTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCG-TCCCGGGGGGTGA- 34328 |||||||||||| | || || | |||||| | || |||| | | | | || Sbjct 2342 CTGCTGTGGTTCATCAGCGGCG------ACACCAGCGCGCACTCGCTGCAGCAGAAGGAC 2289 Query 34329 ----AGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCT 34384 | |||||||||| | | ||| || || | |||||||| || ||| | | | Sbjct 2288 ATCCACATCTGGGACGGCAATGCGTCGCGCGAGTATCTGGACAGTCGAGGGCTGCAGGCG 2229 Query 34385 CGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAG 34444 || |||| ||||||| | || ||||||||||| ||||||||| | || ||||| || || Sbjct 2228 CGAGAGGTGGGCGACCTCGGACCGGTCTACGGCTTCCAGTGGCGGCATTTTGGCGCCAAG 2169 Query 34445 TATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATC 34504 || || | | || || || | || ||||| | ||||||||| | || ||| Sbjct 2168 TACACGGACATGCATGCCGATTACACTGGCCAGGGCGTGGACCAGCTCGCGGGGGTTATC 2109 Query 34505 GACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAG 34564 ||| || |||||| ||| | | |||||| ||| |||||||| ||| | Sbjct 2108 CACAAGCTGCGCACGAACCCGACGGACCGCCGCATCGTGCTGTCGGCGTGGAATCCGGCG 2049 Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 |||||| | |||||||||||| |||||||||| ||||||| |||||||| || | Sbjct 2048 GATCTCAATGAGATGGCGCTCCCGCCGTGCCACATGTTCTGCCAGTTCTACGTGGCCGAC 1989 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||| ||||||||| | || || || |||| |||||||| | || ||||||||| Sbjct 1988 GGCGAGCTTTCCTGCCAGATGTACCAGCGCTCGGCCGACATGGGACTTGGCGTGCCGTTC 1929 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCT 34744 || || ||||| ||||| |||| ||| || | || || || | || ||| ||| Sbjct 1928 AATATCGCTAGCTACGCATTGCTTACGCGACTGGTTGCGCAGGTGGCTGGATTGAAGCCT 1869 Query 34745 GGGGAGCTGGTGCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGC 34802 || ||| | || | |||| | || ||||| || | || ||||| || |||||| || Sbjct 1868 GGAGAGTTTGTTC--ACGTTATTGGAGATGCCCACGTGTATCTGAATCATGTCGAGCCGC 1811 Query 34803 TCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCC 34839 ||| || ||||| ||| || || |||||||| Sbjct 1810 TCCAGAAGCAGCTTACTCGAACACCGCGTCCGTTCCC 1774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448230029851440