Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1844 131 1e-25 seq4 109 4e-19 >seq1844 Length=5900 Score = 131 bits (144), Expect = 1e-25 Identities = 399/618 (65%), Gaps = 25/618 (4%) Strand=Plus/Plus Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 ||||| || || || | || || ||||| |||||||| | ||| ||||||||||| Sbjct 1810 AGCGGCTCGACATGATTCAGATACACGTGGGCATCTCCAATAACGTGAACAAACTCTCCA 1869 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29767 || | | || | || || || | || ||| || | | |||||| ||||| || Sbjct 1870 GGCTTCAATCCAGCCACCTGCGCAACCAGTCGCGTAAGCAATGCGTAGCTAGCGATATTG 1929 Query 29768 AAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG 29827 || ||||| || || |||||||| | || | |||||| | |||||| || ||||| ||| Sbjct 1930 AACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAGGAAAGCTCGCCG 1989 Query 29828 TCGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAG 29884 ||| |||||| ||||| | ||||| |||||||| || || ||||| | | Sbjct 1990 TCGGCCACGTAGAACTGGCAGAACATG---TGGCACGGCGGGAGCGCCATCTCATTGAGA 2046 Query 29885 TCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGT-CTTCTGGGTTGT-----TCCTG 29938 || || ||||| || ||| | |||||| | || | || || | || | || Sbjct 2047 TCCGCCGGATTCCACGCCGACAGCACGATGCGGCGGTCCGTCGGGTTCGTGCGCAGCTTG 2106 Query 29939 ATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNN 29998 || || | ||| ||||| ||||| ||| || | ||| || | Sbjct 2107 TGGATAACCCCCGCG------AGCTGGTCCACGCCCTGGCCAGTGTAATCGGCATGCATG 2160 Query 29999 NNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCC 30058 | ||||||| ||||||||| ||||| |||||||| ||||| ||| Sbjct 2161 TCCGTGTACTTGGCGCCAAAATGCCGCCACTGGAAGCCGTAGACCGGTCCGAGGTCGCCC 2220 Query 30059 TCTTCCCTGTGCTCGAAGCCC-CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCA 30117 | || | | || | ||||| | |||||| | | || | || | ||| ||||||| Sbjct 2221 ACCTCTC-GCGCCTGCAGCCCTCGACTGTCCAGATACTCGCGCGACGCATTGCCGTCCCA 2279 Query 30118 GATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30177 ||| | | |||||| ||| | | | | ||| || |||| ||||||||| Sbjct 2280 GATGTGGATGTCCTTCTGCTGCAGCGAGTGCGCGCTGGTGTCGCCGCTGATGAACCACAG 2339 Query 30178 CAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC----T 30233 ||||||||| | ||| | ||| || || | |||||||||||| || || ||| | Sbjct 2340 CAGCTCCTCGGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGGAACACGTT 2399 Query 30234 GTCCCTTGAGGCCGTACC 30251 ||||| |||||| | ||| Sbjct 2400 GTCCC-TGAGGCTGAACC 2416 >seq4 Length=136950 Score = 109 bits (120), Expect = 4e-19 Identities = 189/272 (69%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 49862 ACTCGTATCT-CTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCGACCCGAAAGGCA 49920 ||||| |||| |||||| | |||||| || | | ||| || | || || | ||| | Sbjct 14560 ACTCG-ATCTTCTCGAGGATGAGCTGCGCCACGCGGTCCCCGCGCTGCACGGGGAAGTCC 14618 Query 49921 TCACACCCAAAGTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACC 49980 || | | ||| ||||| || ||||| | |||||| | |||||||| ||| | ||| Sbjct 14619 TCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCGATCACG 14678 Query 49981 CCGGCACCGACGTCTATAAACTTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCG 50040 || || || ||| || ||||| || || |||||||| || | || ||||| | || Sbjct 14679 CCCGCGCCCGTGTCGATGAACTTCTTGAGCGCCAGGCCAGAGCGCGGCGCCACGCGCGCG 14738 Query 50041 TAGAGGCCCGGGGGCATCTTCACGGCAAGGTCCGTCTTTACCAGGGCCCTGCCGAAGGAG 50100 ||| ||| | ||||| || | ||||||||||| || ||| || ||||| | | Sbjct 14739 TAGCAGCCGGCGGGCACGGCGACCACCAGGTCCGTCTTGACGAGGCCCTTGCCGCCCGCG 14798 Query 50101 GGGACCACGACGGGGTGAGCGGCCGCCAGGTC 50132 |||| |||| || || ||||||| |||||| Sbjct 14799 GGGATCACGGCGTCGTAGGCGGCCGACAGGTC 14830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406134603191422