Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq50 122 3e-23 >seq50 Length=77014 Score = 122 bits (134), Expect = 3e-23 Identities = 197/276 (71%), Gaps = 8/276 (3%) Strand=Plus/Plus Query 31005 CCATGCACATGTGTCGCGCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGA 31064 ||||||||||||| |||| |||||||| | |||||||||| || | | | | Sbjct 71555 CCATGCACATGTGCGTGGCCTCGATGACCACGGCCACGCCCTTGGGCTCGATGACGCCCA 71614 Query 31065 ACAGTGCGTCCGCGATCTGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCG--AGCATA 31122 | |||| |||||||| | |||||||| |||||||| ||||||||||| || | | Sbjct 71615 TGATGGCGTTGGCGATCTGCTTGGTGAGCCGCTCCTGCACCTGCAGGCGGCGCGAGAAGA 71674 Query 31123 CATGTCCGCCAGGCGGGACAGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCT 31182 | | | | | | || ||||||||| || |||| | ||||| || ||||||| Sbjct 71675 CCTCGCTGACT--CTGGCCAGCTTGCTGAGCCCCAGCACCTTGCCGTTGGGGATGTAGCC 71732 Query 31183 GATCGTG-ACCGTGCCGAAGATCGGCGCGAGGTGATGCTCGCA-ATGTGAGTAGATGGGG 31240 ||| ||| ||| |||| || |||| | | ||| |||||||| ||| ||||| | | | Sbjct 71733 GAT-GTGCACCTTGCCCGTGAACGGCACCATGTGGTGCTCGCACATG-GAGTACAGGTCG 71790 Query 31241 ATGTCGCGCACCGTCACCATCTGGTCATGCTTCTCC 31276 ||||||||||| | ||||||| ||| || | |||| Sbjct 71791 ATGTCGCGCACGATGACCATCTCGTCGTGGTCCTCC 71826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187276751582272