Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq45 113 1e-19 seq745 111 4e-19 seq6 107 4e-18 >seq45 Length=78880 Score = 113 bits (124), Expect = 1e-19 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || ||||| || ||||| || ||||||||||| ||| || || | || || Sbjct 57042 AGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAACGTGCGGCCGTCC 56983 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| || | ||||||||| | || ||| || ||||| ||| Sbjct 56982 TCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCT 56923 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| || || || | || | ||| || ||| || || || || || || Sbjct 56922 TGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTC 56863 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || ||||||||||||| |||||| || Sbjct 56862 TTGCCGGTCAGCGTCTTCACGAAGATCTGCATCTT 56828 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || |||||||| ||||| || ||||||||||| ||| | || | || || Sbjct 57270 AGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 57211 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| || | ||||||||| | || ||| || ||||| ||| Sbjct 57210 TCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCT 57151 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| || || || | || | ||| || ||| || || || || || || Sbjct 57150 TGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTC 57091 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||||||||||| |||||| Sbjct 57090 TTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 57059 >seq745 Length=17434 Score = 111 bits (122), Expect = 4e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| || | | || | || || || || || ||||||||||| Sbjct 12112 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 12053 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 | | ||||||||| | || ||| || ||||| || || ||||| || |||||| | || Sbjct 12052 AAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 11993 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | |||||| || ||| || || || || || || |||||||| || |||||||| ||| Sbjct 11992 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 11933 Query 152097 ACCTGCATTTTACCCT 152112 | |||||| | |||| Sbjct 11932 ATCTGCATGATTCCCT 11917 >seq6 Length=256829 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || |||||||| || ||||||||||| ||| | || | || ||| Sbjct 246166 AGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCT 246107 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| || | ||||||||| | || ||| || ||||| || Sbjct 246106 TCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 246047 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || || || | || | ||| || ||| || || || || || || Sbjct 246046 TGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATGGTC 245987 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || ||||| ||||||| |||||| Sbjct 245986 TTGCCCGTCAGCGTCTTTACGAAGATCTGCAT 245955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153735396708367