Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq6 167 2e-36 seq45 163 3e-35 seq745 154 1e-32 seq93 134 1e-26 seq4 84.2 2e-11 >seq6 Length=256829 Score = 167 bits (184), Expect = 2e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||||| |||||||| ||||||||| ||||| |||||| Sbjct 246182 GCCACCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 246123 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||| ||||| ||||||||||| ||||| | || Sbjct 246122 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGG 246063 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| || || |||||| ||| | | | | ||| || ||||| Sbjct 246062 GATGCCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCA 246004 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || | ||| || || || |||||||||||||||||||| |||||||| Sbjct 246003 CGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTTACGAAGATCTGCAT 245955 >seq45 Length=78880 Score = 163 bits (180), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | |||||| || || || ||||||||| ||||| |||||| Sbjct 57285 CCGCCACGAAGACGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 57226 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||| ||||| ||||| ||||| ||||| | || Sbjct 57225 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 57166 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| |||||| |||||| ||| | | | | ||| || |||||| Sbjct 57165 ATGCCCTCCTTGTCTTGGATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCAC 57107 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| ||| ||||| || || ||||||||||| ||||| ||||||||| Sbjct 57106 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 57058 Score = 150 bits (166), Expect = 2e-31 Identities = 174/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | |||||| || || || ||||||||| ||||| |||||| Sbjct 57058 GCCACCACGCAGGCGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCT 56999 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| |||| || ||||||||||| ||||| ||||| ||||| ||||| | || Sbjct 56998 CAACGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 56939 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||||| |||||| |||||| ||| | | | | ||| || ||||| Sbjct 56938 GATGCCCTCCTTGTCTTGGATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCA 56880 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | |||| ||| ||||| || || ||||||||||| ||||| |||||||| || Sbjct 56879 CGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATCTT 56828 >seq745 Length=17434 Score = 154 bits (170), Expect = 1e-32 Identities = 151/192 (79%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||| ||||| ||||| |||| |||||||||||||||||||| | Sbjct 12114 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 12055 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 ||| |||||| ||||| | || | || |||||||||| |||||| ||||| || | Sbjct 12054 TCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTT-GACATTG 11996 Query 41793 ACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 || | ||||| || |||||| |||| ||| || || || |||||||| ||||| || Sbjct 11995 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 11936 Query 41852 AAAATCTGCATG 41863 || ||||||||| Sbjct 11935 AAGATCTGCATG 11924 >seq93 Length=65012 Score = 134 bits (148), Expect = 1e-26 Identities = 103/122 (84%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || ||||| | |||||| |||||||||||||||||||| ||||| ||||| Sbjct 59781 CCACCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCC 59722 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 ||||| ||||| |||| || ||||||||||||||||| ||||||||||| ||||| | | Sbjct 59721 GAGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGG 59662 Query 41753 GG 41754 || Sbjct 59661 GG 59660 >seq4 Length=136950 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/178 (71%), Gaps = 1/178 (1%) Strand=Plus/Minus Query 85781 CCCGCCGGGCTGCTACATTCGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTAT 85840 |||||||| ||||||| || | || || || || ||||| || |||| | || Sbjct 14752 CCCGCCGG-CTGCTACGCGCGCGTGGCGCCGCGCTCTGGCCTGGCGCTCAAGAAGTTCAT 14694 Query 85841 CGACGTGGGCGCCGGGGTCATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTT 85900 |||| |||||| || || |||||||||||||||||||| ||||| | | | || || Sbjct 14693 CGACACGGGCGCGGGCGTGATCGACGCCGACTACCGCGGCAACGTGGGCGTGATCCTGTT 14634 Query 85901 CAACCACGGCGAAGAGGATCTGGTCGTGAGGCGAGGAGACAAGGTGGCCCAGTTCATC 85958 |||||||| | ||||| | |||| ||| || ||| ||||| ||| ||||| Sbjct 14633 CAACCACGCGGCCGAGGACTTCCCCGTGCAGCGCGGGGACCGCGTGGCGCAGCTCATC 14576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462270615872400