Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq451 158 3e-33 seq374 111 3e-19 seq5360 91.5 3e-13 >seq451 Length=28809 Score = 158 bits (174), Expect = 3e-33 Identities = 672/1049 (64%), Gaps = 37/1049 (4%) Strand=Plus/Plus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| |||||||| | ||||| ||||| |||||||||| ||| |||||| Sbjct 16164 CTCCTTGTCCTCACCGGACTGGAAGCGCCACTGGATGTACTGGTTGGCCGTCTCGTCAAG 16223 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 ||| ||| |||||||||||||| ||||| |||||||| || | |||||| || || Sbjct 16224 GTGAGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGCAGGGTG 16283 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || ||| | || | |||| | ||||| |||| ||| || || || Sbjct 16284 CTTCCACACCTGGCCGCTCGTCGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGA 16343 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTG-------GAGTTCAGCGATACCT 319222 || || |||||||| ||| | ||| |||| | | ||| || || ||| Sbjct 16344 CTTACCGGCACCGTTGGGGCCAAGCACGGCGATACGGCTCGACAGAGCGCA-CGTCACC- 16401 Query 319223 GGGCATTCACGTTG-TCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCG 319281 | | | |||| || | | | || | |||||| |||||| || || Sbjct 16402 --GAAATGTTGTTGATCGACG----GCTTCGGGGCACCCGGGTACTTGTACGAG-CAGTT 16454 Query 319282 CGT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGG 319340 || || ||||||| |||| ||||| | | ||||| || ||||| || Sbjct 16455 GGTCAGACGAATGATGGGCTTACCCTTGTTCTTGATATCAGCCAGGAAACCAGGCTCCGG 16514 Query 319341 GAACTTCCACGT---GGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACG 319397 |||| | || | | ||| || ||| || ||||||| | | ||||| Sbjct 16515 GAACGTGAACTTCACGTTCTCCGACTCC---AGCTCGTAGTAGGCCTTGGCCTCGGGCTT 16571 Query 319398 CTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTA 319457 || || |||||||| ||| || || |||||||| |||||||||| || | || || Sbjct 16572 CTGCTCCACGAACTTGGAAAGGTTACCCTTGTAGATCTTCAGCTTGCGGGTC---TCATA 16628 Query 319458 ATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCA 319517 |||||||| ||| || || ||||||||| || |||||||| ||||| || | | | Sbjct 16629 GTGGATAATGTTGGTACACACGTTGTCGAGGAAGCCAGAGTCGTGAGACACCATGATGGA 16688 Query 319518 CGAAACGTCCTTAAGGTTGATCAGGTA-TTCAATCAA-CCACCTCACGTTAGACACAGAA 319575 | || | | | || ||||||| ||| |||| ||| ||||| ||| Sbjct 16689 GGTGACCGTCGGCACGCTGGTCAGGTAGTTC--TCAAGCCAGGCGACGTTCTTGACATCC 16746 Query 319576 AGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCA 319635 | ||||| |||||||| ||||||||||| | | || ||||| ||||| ||||| | Sbjct 16747 AAGTGGTTCGTCGGCTCATCAAGAAGCAGAATGTCAGCCTTCAGCAGCATGGCACGCGAC 16806 Query 319636 AGAGCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCA 319695 || |||||||||| ||||| || || || || | | | | || || ||| Sbjct 16807 AGCTCGAGTTTCATCTTCCAACCACCCGACAGGGAGCCCACGGCCTGAGCCTGCATCTCG 16866 Query 319696 ATATCAAAGCCAACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTTTCC 319755 ||||| || | || | | ||| || | || | | || ||| Sbjct 16867 GGGGTGAAGCCGACGTCGCCAAGGGCGTTCTCGACCTCCTTGCGGG---GAGTG---TCC 16920 Query 319756 TTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGGACCCGTCG 319815 || | | ||||| | |||||||| | | | | | || || || | | Sbjct 16921 TTCAGGTCGTCATCGATCAGGATGAAGTCGACCACCGACAGCTCAGCCTCCGAAGCCTGC 16980 Query 319816 AGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTCAAGCTGG 319875 || | ||| || ||| | |||| |||| | ||| |||||| || || |||||| Sbjct 16981 AGGTTGTGCTCGACGAACACAGTCTTCAGCTCGTCCTTGCTGGGGAAGCCCTCGAGCTGG 17040 Query 319876 CCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACACAGACCG 319935 ||||| |||| |||||||| || || || ||||| ||||| || || ||||||||| Sbjct 17041 CCGTTGGCAATGGCGCGCATGAGCGTCGACTTACCACAACCGTTGGGGCCGCACAGACCG 17100 Query 319936 TAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCACCATAT 319995 || |||| || || || ||| | || | ||||||||| ||||| | ||||| || Sbjct 17101 TAACGGTGGCCACGCTTGAGGCGAAGACGGGCGTTGTTCAGCAGAATCATACCACCGTAG 17160 Query 319996 GCCAGAGAAAATTCACAATCACACAGATC 320024 || || || || || || | ||||| || Sbjct 17161 GCAAGCGAGAACTCGCAGTTGCACAGGTC 17189 >seq374 Length=32324 Score = 111 bits (122), Expect = 3e-19 Identities = 263/387 (68%), Gaps = 14/387 (4%) Strand=Plus/Minus Query 230230 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 230289 |||||| ||||||| ||||| ||| || | ||||||||||| | | || ||| Sbjct 1710 TTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAAC 1651 Query 230290 GAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTT-ATGTATTCAAA 230348 ||| | ||||| || ||||||||| | || | |||| || || | ||||| || || Sbjct 1650 GAGCTGATCAGCCGTGACGAGGGTATGCACACGGACTTCG-CGTGCCTCATGTACTCCAA 1592 Query 230349 GCTCCAGAACAAGCTACCATTCGAGACG-GTCAAACAAATCATTACAGAAGCAGTTGAAA 230407 ||| ||||||||| || ||| || || | | || | || || || | | Sbjct 1591 GCTGGTGAACAAGCTGCCGGA-GAGCCGCGTGCACGAGATTGTGCGCGACGCGGTGGTGA 1533 Query 230408 ACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAA 230466 ||| | |||||| | | ||| | | || ||| | || || ||||||||| | | Sbjct 1532 TCGAGCACGAGTTCGTGCGCGACTCGCTCCC-TGTGGAGCTGATCGGCATGAACTCGGCG 1474 Query 230467 CTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACT---TGGTTAC 230523 || ||| | ||||||||||| ||||| |||||||| | ||||| ||| ||| | Sbjct 1473 CTCATGTGCCAGTACATCGAGTTCGTGGCCGACCG----TCTGTTGTACTCGCTGGGTGT 1418 Query 230524 GAGAAAG-TGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGG 230582 | |||| | |||||| |||||||| || | | ||||| | || || || || || Sbjct 1417 GCCAAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGACATGATCTCTCTCCAGGG 1358 Query 230583 GAAGACCAACTTCTTCGAAAAGCGTGT 230609 ||||||||||||||||| ||||| || Sbjct 1357 CAAGACCAACTTCTTCGAGAAGCGCGT 1331 >seq5360 Length=1337 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||| Sbjct 1229 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 1170 Query 165771 CCACG 165775 ||||| Sbjct 1169 CCACG 1165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057739020370100