Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq5612 136 4e-27 seq374 131 2e-25 >seq5612 Length=1235 Score = 136 bits (150), Expect = 4e-27 Identities = 307/457 (67%), Gaps = 6/457 (1%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 |||| || || ||||| || || | || ||||||| |||||| || ||||| || | Sbjct 567 ACATGAGGCACGCGAAGTCCGTGTGCATACCTTCGTCTCGGCTGATGAGCTCGTTCGAGA 626 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | ||| || ||||| || || ||||| | ||| || || | | |||||| || | Sbjct 627 AGCTCAGACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCG 686 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | || || || ||||| |||| || ||||| | | || || | ||||| || || Sbjct 687 AGAAAAAGATGCCCTCCACGGCAGCGAACGCCAGCAGACGCTCCGGGTACGACGACACTC 746 Query 17136 T-GTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 | || | ||| || || |||| | ||||| | ||| | ||| ||||| || Sbjct 747 GCGGGTCGCA-CCACTTGAGCGCCCAGTGCGCTTTCTTCTTGACGCACGGGATCGTCTCG 805 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||||| | | | | || ||| ||| | || || ||||| ||||| || Sbjct 806 ATGGCACGCAGCAGGTGGTTCTTCTCCATCGTGTCCTTGATGTAGGTATCAATGAGCAGC 865 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 ||||| |||| ||| |||||||| ||||| ||||| || ||||| ||||| ||| | Sbjct 866 GAGTACACCTCGGCGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGGACC 925 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTAGATTTTCGTTCACGATGCCGT 17372 || | | || ||||| | ||| |||| || || || |||||||||||||||| Sbjct 926 TCGGGCACCTGCACTTCGTTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCCGT 983 Query 17373 CGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 |||| |||||||| || |||| | ||||| ||||| Sbjct 984 CGCTGGCGGCGAAGAAGGCCAGCACGTGCTTGATGAA 1020 >seq374 Length=32324 Score = 131 bits (144), Expect = 2e-25 Identities = 306/457 (67%), Gaps = 6/457 (1%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 |||| || || ||||| || || | |||||||| | |||||| || ||||| || | Sbjct 1599 ACATGAGGCACGCGAAGTCCGTGTGCATACCCTCGTCACGGCTGATCAGCTCGTTCGAGA 1658 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | ||| || ||||| || || ||||| | ||| || || | | ||| || || | Sbjct 1659 AGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCG 1718 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | ||||| || ||||| |||| || ||||| | | || || | ||||| || | Sbjct 1719 AGAAGAAAATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTACGACGACACAC 1778 Query 17136 T-GTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 | || | ||| || || |||| | ||||| | ||| | ||| ||||| || Sbjct 1779 GCGGGTCGCA-CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACGCACGGGATCGTCTCG 1837 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 || || | | | || || ||| ||| | || ||||| ||||| || || Sbjct 1838 ATCGCGCGCAGCAGGTGGTCCTTCTCCACGGCGTCCTTGATGTACGTGTCGATCAGCAGC 1897 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 ||||| || ||||| |||||||| ||||| ||||| || ||||| ||||| || || Sbjct 1898 GAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCC 1957 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTAGATTTTCGTTCACGATGCCGT 17372 |||| | || ||||| | ||| |||| || || || |||||||| || |||| Sbjct 1958 TCCGGCACCTGCACTTCATTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACAATACCGT 2015 Query 17373 CGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 ||||||| ||||| ||||||| | ||||| ||||| Sbjct 2016 CGCTCGCAGCGAAGAACGCCAGCACGTGCTTGATGAA 2052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517505037363600