Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq374 125 7e-24 seq5612 111 2e-19 >seq374 Length=32324 Score = 125 bits (138), Expect = 7e-24 Identities = 307/458 (67%), Gaps = 8/458 (2%) Strand=Plus/Plus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || ||||||||||| || | || ||||| | |||||| || ||||| || | Sbjct 1599 ACATGAGGCACGCGAAGTCCGTGTGCATACCCTCGTCACGGCTGATCAGCTCGTTCGAGA 1658 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCC 16312 | | | || ||||| || || ||||| | |||||| || | |||| || || ||| Sbjct 1659 AGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGGAGCCC 1717 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAG-CATC 16371 || ||||| || ||||| || | || || || | | || |||| ||||| | || Sbjct 1718 GAGAAGAAAATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTACGACGACACA 1777 Query 16372 TTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTC 16431 || | ||| || | |||| | ||||| | || | || ||||| || Sbjct 1778 CGCGGGTCGCA-CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACGCACGGGATCGTCTC 1836 Query 16432 TATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAA 16491 || || | || | || || ||| || | || ||||| || ||||| | Sbjct 1837 GATCGCGCGCAGCAGGTGGTCCTTCTCCACGGCGTCCTTGATGTACGTGTCGATCAGCAG 1896 Query 16492 ACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGC 16551 ||||| || ||||| |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 1897 CGAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGC 1956 Query 16552 CTCCGCTATTTGTACTTCCACGTAAAATCGTTCC--GCCAGGTTCTCATTCACGATACCG 16609 ||||| | || ||||| | || |||| ||||||||||| ||||| |||||| Sbjct 1957 CTCCGGCACCTGCACTTCATTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACAATACCG 2014 Query 16610 TCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 || || ||||| || ||||||| | |||||| ||||| Sbjct 2015 TCGCTCGCAGCGAAGAACGCCAGCACGTGCTTGATGAA 2052 >seq5612 Length=1235 Score = 111 bits (122), Expect = 2e-19 Identities = 306/459 (67%), Gaps = 10/459 (2%) Strand=Plus/Plus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || ||||||||||| || | |||||||||| |||||| || ||||| || | Sbjct 567 ACATGAGGCACGCGAAGTCCGTGTGCATACCTTCGTCTCGGCTGATGAGCTCGTTCGAGA 626 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCC 16312 | | | || ||||| || || ||||| | |||||| || | |||| || || ||| Sbjct 627 AGCTCAGACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAACGAGCCC 685 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAG-CA-T 16370 || || || || ||||| || | || || || | | || |||| ||||| | || | Sbjct 686 GAGAAAAAGATGCCCTCCACGGCAGCGAACGCCAGCAGACGCTCCGGGTACGACGACACT 745 Query 16371 CTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTT 16430 | | || | ||| || | |||| | ||||| | || | || ||||| | Sbjct 746 CGCGGGT-CGCA-CCACTTGAGCGCCCAGTGCGCTTTCTTCTTGACGCACGGGATCGTCT 803 Query 16431 CTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTA 16490 | ||||| | || | | || ||| | || | || || |||||||| || | Sbjct 804 CGATGGCACGCAGCAGGTGGTTCTTCTCCATCGTGTCCTTGATGTAGGTATCAATGAGCA 863 Query 16491 AACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAG 16550 ||||| || | ||| |||||||| ||||| ||||| || || |||||||| || Sbjct 864 GCGAGTACACCTCGGCGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGGA 923 Query 16551 CCTCCGCTATTTGTACTTCCACGTAAAATCGTTCC--GCCAGGTTCTCATTCACGATACC 16608 |||| | | || ||||| | || |||| ||||||||||| |||||||| || Sbjct 924 CCTCGGGCACCTGCACTTCGTTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCC 981 Query 16609 GTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 ||| || || || || || |||| | |||||| ||||| Sbjct 982 GTCGCTGGCGGCGAAGAAGGCCAGCACGTGCTTGATGAA 1020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511374317896400