Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq2085 235 6e-57 >seq2085 Length=5363 Score = 235 bits (260), Expect = 6e-57 Identities = 473/688 (69%), Gaps = 15/688 (2%) Strand=Plus/Minus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || ||||| || || || || || ||||| || || || | ||||| | || || || Sbjct 5031 AGCGGCTCGACATGATTCAGATACACGTGGGCATCTCCAATAACGTGAACAAACTCTCCA 4972 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAG-GTCAGCAGGGAGTAGCTGGCTATGTT 145802 |||| | || | | || || |||| || | || |||| | |||||| || || || Sbjct 4971 GGCTTCAATCCAGCCACCTGCGCAACCA-GTCGCGTAAGCAATGCGTAGCTAGCGATATT 4913 Query 145803 GAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCC 145862 ||| ||||| || || |||||||| ||||||||||||||| ||||||||| ||||| || Sbjct 4912 GAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAGGAAAGCTCGCC 4853 Query 145863 GCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTC 145922 | | ||||||||||||||||| | | |||||| ||||| || ||||| | || || Sbjct 4852 GTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCATCTCATTGAGATC 4793 Query 145923 CGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCC 145982 |||||| ||||| || | || |||| | | | | |||||| | | || Sbjct 4792 CGCCGGATTCCACGCCGACAGCACGATGCGGCGGTCCGTCGGGTTCGTGCGCAGCTTGTG 4733 Query 145983 TATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACGT 146041 || | || |||||||||||||||||| || |||||| | | || | |||| || Sbjct 4732 GATAACCCCCGCGAGCTGGTCCACGCCCTGGCCAGTGTAATC-GGCATGCATGTCCGTGT 4674 Query 146042 ACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCC 146101 || ||| || || |||| ||||||||| |||||||| || || ||||| || ||| | Sbjct 4673 ACTTGGCGCCAAAATGCCGCCACTGGAAGCCGTAGACCGGTCCGAGGTCGCCCACCTCTC 4614 Query 146102 TGTGCC-CCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTG 146160 | ||| |||||| | | | || | || || ||| | ||| |||||||||| | | Sbjct 4613 -GCGCCTGCAGCCCTCGACTGTCCAGATACTCGCGCGACGCATTGCCGTCCCAGATGTGG 4555 Query 146161 ACGCCCCTC-GCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTC 146219 | | || || || | ||| | | | ||| || ||||||||||| |||||||| Sbjct 4554 ATGTCCTTCTGCTG-CAGCGTGTGCGCGCTGGTGTCGCCGCTGATGAACCACAGCAGCTC 4496 Query 146220 TTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAAC---TGGCCCCG 146276 ||| || || | |||||| || | |||||| || ||||| |||||| | | ||| Sbjct 4495 CTCGGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGGAACACGTTGTCCCT 4436 Query 146277 CAGGGAGTACTTGGCCTGGTCCCCGAAGACGGACAGGGTGCCCACGCCCGTCCTGTC--C 146334 ||| | || ||| | |||||||| ||||| |||||| ||||| | ||| | Sbjct 4435 GAGGCTGAACCGCATCTGCGCGCCGAAGACCGACAGCGTGCCCGTCCCCGTGCGGTCTGC 4376 Query 146335 CCCCTGCGCACCCCGTTCGCCAGGATCT 146362 | || || ||| || | |||||||| Sbjct 4375 GCGCTCGGCTCCCTGT--GTCAGGATCT 4350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590030552730800