Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_001847.1 Length=135301 Score E Sequences producing significant alignments: (Bits) Value seq303 113 4e-20 >seq303 Length=37311 Score = 113 bits (124), Expect = 4e-20 Identities = 179/249 (72%), Gaps = 17/249 (7%) Strand=Plus/Minus Query 98216 GTGCGAGCCCGGCGCCCCGCTCCGCACGGTGAGCGAGGTGTTAAGCAGCAGCACGCCGCG 98275 ||||||| |||| | |||| || ||||| ||| |||||| |||||||||||||| | Sbjct 1633 GTGCGAGTTCGGCTCTCCGCGGCGGACGGTAAGCACGGTGTTGAGCAGCAGCACGCCCTG 1574 Query 98276 GCGCGCCCAGTCCTCTAGGCAGCCGTGCGACGGCCG--CGGAGCTCCGGGAAAGTTCTTC 98333 ||| |||| ||||||||||||||||| || || || | | || ||| Sbjct 1573 GCGGCTCCAGCAGGACAGGCAGCCGTGCGACGGGCGGTCGATGCCC-----ACGTCGTTC 1519 Query 98334 TGCACGGCAGCGT---AGATGTTCTGGAGGCTGGGTGGGACCGGAACGCCGCGGTTCACG 98390 | ||| | | ||||||||| ||||||||| || ||| |||||| || ||| Sbjct 1518 ---ATGGCCTCCTTGAAGATGTTCTTGAGGCTGGGCGGCGGCGGGACGCCGTGGCGCAC- 1463 Query 98391 CTAAAAGCCAAG-CCGTGGGCTTGCCCGCGGCT-GTGATAGGGGTCCTGGCCCAGAATGA 98448 | | |||| || |||||||| ||| ||||| |||||| |||||||||||||| || | Sbjct 1462 CGAGAAGCTCAGTCCGTGGGCCTGCT-GCGGCCCGTGATACGGGTCCTGGCCCAGGATCA 1404 Query 98449 CAACCTTGA 98457 | ||||||| Sbjct 1403 CCACCTTGA 1395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432805324383140