Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq374 389 4e-103 seq5612 361 6e-95 seq14 154 2e-32 seq54 138 1e-27 seq710 136 4e-27 seq50 111 2e-19 >seq374 Length=32324 Score = 389 bits (430), Expect = 4e-103 Identities = 610/862 (71%), Gaps = 16/862 (2%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| | ||| | |||||| |||||||||| | ||||| || || | | ||| Sbjct 2220 GAGCCGTTCCTGGCGGCGAACCCGAACCGGTTCGTGCTGTTCCCGATCCAGGAGCACGAC 2161 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 |||||| |||||||| ||||||||||| ||||||||||| | ||||||| |||||||| Sbjct 2160 GTGTGGCAGATGTACAAGAAGGCCGAGGCCTCGTTCTGGACGGCCGAGGAGCTGGACCTG 2101 Query 116696 -TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 | || | | | || ||||||| | | ||| ||||||||||| ||||||||||| Sbjct 2100 GTGCACGACCTCAAG-GACTGGGCGAACCTGACGGACAACGAGCGGTTCTTCATCAAGCA 2042 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 ||||||||| || ||||| || |||||||| || || |||||||| |||| | | || Sbjct 2041 CGTGCTGGCGTTCTTCGCTGCGAGCGACGGTATTGTGAACGAGAACCTGGCCATGAACTT 1982 Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | | || ||||||||| | ||||| || |||||||||||||| ||||||||||| || Sbjct 1981 CAGCAATGAAGTGCAGGTGCCGGAGGCTCGCTGCTTCTACGGCTTCCAGATCGCCATCGA 1922 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGA 116934 |||| | |||||||| |||| ||| || |||||||||||| | | | ||| Sbjct 1921 GAACATCCACTCGGAGGTGTACTCGCTGCTGATCGACACGTACATCAAGGACGCCGTGGA 1862 Query 116935 GAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTG 116994 |||| || || || ||| ||||||||||| |||||||| || |||| || | || Sbjct 1861 GAAGGACCACCTGCTGCGCGCGATCGAGACGATCCCGTGCGTGAAGAAGAAAGCGCACTG 1802 Query 116995 GGCGCTGCGCTGGATCG-CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCG 117053 |||||| ||| || || || | | | | | | | ||||| ||| |||| |||| Sbjct 1801 GGCGCTCAAGTGGTGCGACCCGC-GTGTGTCGTCGTACCCGGAGCGTCTGCTGGCGTTCG 1743 Query 117054 CGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAAC 117113 | ||||| |||||| | ||||| |||||| ||| | |||| || ||||||||||| | Sbjct 1742 CCGCCGTGGAGGGCATTTTCTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGC 1683 Query 117114 GCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGC 117173 ||||||||||||| ||||||| ||| |||||||| ||| | | ||||||||| ||| Sbjct 1682 GCGGCCTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGGTATGC 1623 Query 117174 ATTGCGACTTTGCCTGTTTGCTG---TTCAAGCATTTGGTG---CAGCGACCGAGCGCGG 117227 | ||||| || || | || | ||||| ||||| ||| ||| | | | Sbjct 1622 ACACGGACTTCGCGTGCCTCATGTACTCCAAGC---TGGTGAACAAGCTGCCG-GAGAGC 1567 Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 |||| | || ||||| || ||||||||| | |||||||| ||| | ||| Sbjct 1566 CGCGTG-CA-CGAGATTGTGCGCGACGCGGTGGTGATCGAGCACGAGTTCGTGCGCGACT 1509 Query 117288 CGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCG 117347 |||| || ||| ||| | || | || | | |||| || ||||||||||||| Sbjct 1508 CGCTCCCTGTGGAGCTGATCGGCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTCG 1449 Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGC 117407 | |||||| | ||| || | ||||| | | ||| ||||||| | |||||| Sbjct 1448 TGGCCGACCGTCTGTTGTACTCGCTGGGTGTGCCAAAGATCTACAACGTGAAGAACCCGT 1389 Query 117408 TGGACTTTATGAACCTCATCTC 117429 | |||| ||| || | ||||| Sbjct 1388 TCGACTGGATGGACATGATCTC 1367 >seq5612 Length=1235 Score = 361 bits (400), Expect = 6e-95 Identities = 605/862 (70%), Gaps = 17/862 (2%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| | || || |||| | |||||||||| | |||| || || | | ||| Sbjct 1187 GAGCCGTTCCTAGTCGCGAACTCGAACCGGTTCGTGCTGTTCCTGATCCAGGAGCACGAC 1128 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 |||||| || ||||| ||| ||||||| ||||||||||| | ||||||| |||||| | Sbjct 1127 GTGTGGCAGAT-TACAAGAAGACCGAGGCCTCGTTCTGGACGGCCGAGGAGCTGGACCAG 1069 Query 116696 -TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 | || | | | || ||||||| | || ||||||||||| ||||||||||| Sbjct 1068 GTGCACGACCTCAAG-GACTGGGCCAACCAGACGGACAACGAGCGGTTCTTCATCAAGCA 1010 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 |||||||||||| ||||||||||||||||||||||| |||||||| |||| | | || Sbjct 1009 CGTGCTGGCCTTCTTCGCCGCCAGCGACGGCATCGTGAACGAGAACCTGGCCATGAACTT 950 Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | | || ||||||||| |||||| || |||||||||||||| ||||||||||| || Sbjct 949 CAGCAACGAAGTGCAGGTGCCCGAGGTCCGCTGCTTCTACGGCTTCCAGATCGCCATCGA 890 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCGGA 116931 |||| | ||| | || |||| ||| ||||| || || ||| | | | | ||| Sbjct 889 GAACATCCACGCCGAGGTGTACTCGCTGCTCATTGATACCTACATCAAGGACACGATGGA 830 Query 116932 GGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGA 116991 | |||| | || || || |||||||||||||| ||||||||||| |||| || | Sbjct 829 GAAGAACCACC---TGCTGCGTGCCATCGAGACGATCCCGTGCGTCAAGAAGAAAGCGCA 773 Query 116992 GTGGGCGCTGCGCTGGATCG-CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCT 117050 |||||||| ||| || || || ||| | | | | | ||||| ||| |||| | Sbjct 772 CTGGGCGCTCAAGTGGTGCGACCCGC-GAGTGTCGTCGTACCCGGAGCGTCTGCTGGCGT 714 Query 117051 TCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGA 117110 |||| ||||| |||||| |||| || |||||| ||| | |||| || |||||||||| Sbjct 713 TCGCTGCCGTGGAGGGCATCTTTTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGA 654 Query 117111 AACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTC 117170 | |||||||||||||| || |||| ||| |||||||||||| | | ||||| ||| Sbjct 653 AGCGCGGCCTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGAGACGAAGGTA 594 Query 117171 TGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCG---G 117227 |||| ||||| || || | ||| | | | | || || | | | || || | Sbjct 593 TGCACACGGACTTCGCGTGCCTCATGTACTCGAAGCTCGT-CAACAAGC-TGCCCGAAAG 536 Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 | ||||| |||||||| ||||||||| | || ||||| ||| | ||| Sbjct 535 C-CGCGTGCACGAGATCGTGCGCGACGCGGTGGTGATTGAGCACGAGTTCGTGTGCGATT 477 Query 117288 CGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCG 117347 ||||||| ||| || | || | || | | |||| || ||||||||||||| Sbjct 476 CGCTGCCTGTGGAGCTCATTGGCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTCG 417 Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGC 117407 | |||||| | |||||| | |||| || ||||| ||||||| |||||| Sbjct 416 TGGCCGACCGCCTGCTGTACTCACTGGGCGTGTCCAAGATCTACAACGTCAAGAACCCGT 357 Query 117408 TGGACTTTATGAACCTCATCTC 117429 | |||| ||| || | ||||| Sbjct 356 TCGACTGGATGGACATGATCTC 335 >seq14 Length=110323 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| |||||||| ||||||| || | | Sbjct 100908 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 100967 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | || |||| ||||| ||||||||||| | ||||| Sbjct 100968 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCA 101026 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || |||| ||||| || | ||||||||| Sbjct 101027 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACTACAA 101086 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | |||||||| || ||| |||| || | || ||| Sbjct 101087 CATCCAGAAGGAGTCTACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 101135 >seq54 Length=76991 Score = 138 bits (152), Expect = 1e-27 Identities = 163/218 (75%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 40683 CCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA 40742 ||| || ||||| || ||||| || ||||| || ||||| || ||||| | ||||| || Sbjct 56857 CCGGAAGATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGA 56916 Query 40743 AGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCG 40801 | | ||| | | |||| | ||| | ||||||| ||||| ||||||||||| Sbjct 56917 GCCGTCGGACTCGATCGACAACG-TGAAGCAGAAAATTCAAGACAAGGAGGGCATCCCGC 56975 Query 40802 CGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 40861 | |||||||| || || |||| ||| ||||| ||||| || |||| ||||| || | || Sbjct 56976 CTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCG 57035 Query 40862 ACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||||||||||| | || || || || ||| Sbjct 57036 ACTACAACATCCAGAAGGAGTCGACTCTTCACCTGGTG 57073 >seq710 Length=19765 Score = 136 bits (150), Expect = 4e-27 Identities = 144/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| |||||||| | ||||| || | || Sbjct 5513 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 5454 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||||| | | | ||||| | ||||| | ||||| ||||||||||| | |||||| Sbjct 5453 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 5394 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 5393 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 5334 Query 40870 ATCCAGAAGG 40879 |||||||||| Sbjct 5333 ATCCAGAAGG 5324 >seq50 Length=78893 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 18588 GGAATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 18529 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || ||| ||||||||||||||||||||| ||||||||| || ||| |||| || | Sbjct 18528 ACGCTCTCGGACTACAACATCCAGAAGGAGAGCACGCTGCACCTGGTGCTGCGTCTGCGT 18469 Query 40912 GGCGGCGGC 40920 || || ||| Sbjct 18468 GGTGGTGGC 18460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515178819695200