Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq54 145 7e-30 seq498 132 4e-26 seq14 132 4e-26 seq710 93.3 4e-14 >seq54 Length=76991 Score = 145 bits (160), Expect = 7e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||| || || |||||||| ||||||| ||||| ||||| Sbjct 57073 CACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTC 57014 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| |||| ||||||||||| || || || ||||||||||||||| Sbjct 57013 AAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 56954 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||| || || || | |||| | ||||| ||| || || | || | ||| || Sbjct 56953 AATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTT 56894 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||| || || || || |||||||| Sbjct 56893 GCCGGTCAGCGTCTTCACGAAGATCTGCAT 56864 >seq498 Length=26695 Score = 132 bits (146), Expect = 4e-26 Identities = 522/818 (64%), Gaps = 20/818 (2%) Strand=Plus/Minus Query 132917 GCGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGA 132976 ||||| || |||||||| || || || |||| ||| ||||| ||||| || ||| Sbjct 5508 GCGCATGTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCAT---CGA 5452 Query 132977 CACCACCGAG-TAA--GTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTAT 133033 | | | | | | || || ||||||| | || ||||| |||||||| || Sbjct 5451 CGTGAGCTTGCTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAAT 5392 Query 133034 GAAAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCGT 133093 | | | | | |||||||| | || || | || ||| ||||||||||| |||| Sbjct 5391 GTAGGCACCGCGGTCGGCCGACAAGTCCAGTACTGCCTTCTGCTTGATCTCCCACACCGT 5332 Query 133094 CTTGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTC 133153 |||| | | |||||| || | || || | | | ||||||||||| ||| || Sbjct 5331 CTTGTACTTCTCCTTGACGTGATCGGGGATGGCCTTCACCTTCTGCACGGAGCCGCCGTC 5272 Query 133154 GGCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGAC 133213 | || |||| ||||||| || || || | ||| | || || || ||| | || | Sbjct 5271 GTTCAGGATCTGATTGCGCACGTCGGGTGTCCAGATGCCCAGCTCAATGAGCTCCTTCAT 5212 Query 133214 GAGATACTGGTTGACCA-CTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCG 133272 || |||| ||| || | | |||| ||| ||||| || || || | | || | || | Sbjct 5211 CAGGTACTTGTTCACGATCGTGAA-CTCACCGGCCAGCACACGGCGGTTGTACATGTTGG 5153 Query 133273 ACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCA 133332 ||||| | || |||| || ||||||||||| || ||||| ||||| | |||||||||| Sbjct 5152 ACGTGTAGGGCTCGATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAAGCCGTGGGCA 5093 Query 133333 TGTACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGT 133392 || ||||||| || ||||| | | |||| ||| | ||| || | | Sbjct 5092 TGGGGGCCACCAGCAGCGAGTTGCGAAGACCGTGTTTGACCACGTTCTCCTTGAGCGCCG 5033 Query 133393 TCCAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAAT 133452 ||||| ||| ||| ||| | |||||| | |||| || | Sbjct 5032 CCCAGTTCCAGAGACCCGAGGACGGGGTGACGCCCCACATGTCG------------AACT 4985 Query 133453 GCAAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGG 133512 | || || ||| |||| |||| | || | ||| || ||||| ||| |||| Sbjct 4984 GGAAGATCCCCTTGCTGGCCGGCGAGCCCTGGAACGTCTCGTAGGGGCCGAGCTCCTTGG 4925 Query 133513 CCAGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATTGAATAGTTGA 133572 | | ||| | | ||| | ||||| |||| || || || ||| | ||||| Sbjct 4924 CAATCTCCATGGACGTCTCGACGGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTGA 4865 Query 133573 CGAACCTGGCATCGTCGCTATCGTAGGCGATGTCGAGAAGAACAAACGCGTCGGCCAAAC 133632 | ||| | ||||| ||| | ||| || | || | || ||||| || | | Sbjct 4864 GCTCGCGGGCCTGCTCGCTCTCGAACGCGTAGTTCATGAGGATGAAGGCGTCCGCGAGGC 4805 Query 133633 CCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGG 133692 |||| | ||||| ||||||||| || || | ||| | | || ||||||| || Sbjct 4804 CCTGGACGCCGATGCCGATGGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCGGCCACGG 4745 Query 133693 GATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGG 133730 |||||| ||| |||||||||| ||||||||| |||||| Sbjct 4744 GATAGTAGTTAACGTCGATGACCTTGTTGAGGTTGCGG 4707 >seq14 Length=110323 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | |||||||| || || |||||||| ||||||| ||||| || Sbjct 101120 CAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTC 101061 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || |||||| |||| || |||||||| || || || |||||||||||||| Sbjct 101060 TTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC 101001 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || || || || | |||| | ||||| ||| || |||| || | || Sbjct 101000 CTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATGGT 100941 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||||| || || || || |||||||| Sbjct 100940 CTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 100908 >seq710 Length=19765 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| || | ||||| ||||||||||| || || ||| |||| Sbjct 5326 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 5385 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || |||||||| || || || |||||||||||||| ||||| || || || | || Sbjct 5386 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 5445 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | | |||| | ||| || || | || | || ||||| ||||| || || ||||| Sbjct 5446 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 5505 Query 118731 ATCTGCATG 118739 ||||||||| Sbjct 5506 ATCTGCATG 5514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433797248578840