Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq14 165 5e-36 seq54 156 3e-33 seq710 136 3e-27 seq50 100 2e-16 >seq14 Length=110323 Score = 165 bits (182), Expect = 5e-36 Identities = 176/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | ||| || ||||| |||||||||||| | Sbjct 101134 CCACCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 101075 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 ||| ||| |||| || | ||||||||| ||||| || || ||||||||||| | |||| Sbjct 101074 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 101015 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||||| | | | | ||||| || | || || || Sbjct 101014 -ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 100956 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 ||| | ||||||||| |||||||| || || ||||| ||||||||||||| Sbjct 100955 GTCGAGCGTGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATCG 100906 >seq54 Length=76991 Score = 156 bits (172), Expect = 3e-33 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 |||||| || || | ||||||||||| | ||| || ||||| |||||||||||| Sbjct 57091 TCCGCCACGAAGACGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCT 57032 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGG 34280 |||| ||| |||| || | ||||||||| ||||| || || ||||||||||| | ||| Sbjct 57031 CAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 56972 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | || ||||||||| || || ||||| | | | | ||||| || | || || | Sbjct 56971 G-ATGCCCTCCTTGTCTTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCA 56913 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||||| |||||| || |||||||| || || ||||| |||||||||||| Sbjct 56912 CGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATC 56863 >seq710 Length=19765 Score = 136 bits (150), Expect = 3e-27 Identities = 145/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| ||||||||||| || ||| ||| |||| || | ||||||||| ||||| || Sbjct 5326 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 5385 Query 34262 AGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGC 34320 || ||||||||||| | |||| | || ||||||||| || || ||||| | || | | Sbjct 5386 AGGCGCTGCTGGTCAGGCGGG-ATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTC 5444 Query 34321 TATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380 || |||| || || ||||||| ||||||||| ||||| || || || |||||||| Sbjct 5445 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 5504 Query 34381 GATCTGCAT 34389 ||||||||| Sbjct 5505 GATCTGCAT 5513 >seq50 Length=78893 Score = 100 bits (110), Expect = 2e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | || || || ||||| ||||||||||| || Sbjct 18464 CCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAG 18523 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 ||| ||| |||| |||| ||||||||| ||||| || || ||||||||||| Sbjct 18524 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 18576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323047312251200