Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq498 226 6e-54 seq5612 150 4e-31 seq115 145 2e-29 seq374 107 4e-18 seq84 95.1 3e-14 >seq498 Length=26695 Score = 226 bits (250), Expect = 6e-54 Identities = 1086/1705 (64%), Gaps = 80/1705 (5%) Strand=Plus/Plus Query 248418 CATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGC 248477 ||||||| ||| |||||| ||||||||| | || |||| |||||||| ||| |||| Sbjct 3288 CATGTACGTCATCAAGCGCGACGGGCGCCAGGAGGACGTCAAGTTCGACAAGATCACGGC 3347 Query 248478 GCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGA--TCATGTGGCCATC 248535 |||||||| |||||||| || || ||| | || ||| ||| || ||| | ||| Sbjct 3348 GCGCATCACCAAGCTCTGCTACGGGCTGAACCCGGACTACGTGGACGCCATCAAG--ATC 3405 Query 248536 GCCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTA 248595 | ||||| || | ||||||| ||| | || || || ||| | ||| | ||| | Sbjct 3406 TCGCAGAAGGTGGTGGCGGGCGTGTACCCGGGCGTGACCACGTCGGAATTAGACGAGCTG 3465 Query 248596 GCTGCGGAGACGGCGGCGTACATGGCGATTGCA-CACCCCGACTACTCGCTGCTGGCCGG 248654 || || ||||| ||||| ||| | | ||| ||||| |||| ||| | |||||| | Sbjct 3466 GCGGCCGAGACCGCGGCCTAC-CAGAGCACGCAGCACCCGGACTTCTCCCGGCTGGCGGC 3524 Query 248655 GAGGATCGCCGTCTCAAGGCTTCACAAAGAAACGAAAGAGTCGTTCGTCGAAACCAT--G 248712 | | |||||||| || | || ||||| | ||||| || ||| ||| | ||| Sbjct 3525 GCGCATCGCCGTGTCCAACCTGCACAAGAACACGAACAAGGTCTTCAGCGACAACATCGA 3584 Query 248713 GCTGACCTACA------TGC-CTATGGGATGG------------------TCGCCGATGA 248747 ||| | ||| ||| | | || || |||| ||||| Sbjct 3585 GCTCTTCCACAAGAACGTGCACGAGAAGACGGGCGCGGCGGCGCCGCTCATCGCTGATGA 3644 Query 248748 CGTCCACAC---CGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGG 248804 ||| || | ||| || | |||| | || || || || || | ||| Sbjct 3645 CGTATACGCGCTCGTGATGGCGCACAA---GGACGAGCTCAACTCGGCCATCATCCACGA 3701 Query 248805 CAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAA 248864 | || || |||||||| | ||| | || ||||| || ||| || ||| || Sbjct 3702 CCGCGACTTCGAGTACGACTACTTCGGGTTTAAAACACTCGAGCGCGGCTACCTCTTCCG 3761 Query 248865 AATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGAT 248924 | | |||||| | ||||| || ||||| ||| | ||||| ||||| | || || Sbjct 3762 CGTAAACGGCAAGGTGGTGGAGCGTCCGCAGCAAATGATTATGCGCGTGGCGCTGGGCAT 3821 Query 248925 TCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGAT 248984 ||||||| ||||| || || ||| ||||||||| ||| | | | Sbjct 3822 CCACAAGGCCGACATCCAGGCCGCGCTGGAGACGTACGAGCTCATGTCGCAGAAGTTCTT 3881 Query 248985 GACACATGCCACACCGACGCTCTTCAACGCCGGTAC----CGTCAACAATCAGCTGAGCT 249040 || || || || |||||||| || |||||||| || |||| |||||| || Sbjct 3882 CACGCACGCGACGCCGACGCTGTTTAACGCCGGAACGCCGCGTC----CGCAGCTGTCCT 3937 Query 249041 CGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAAC 249100 | ||||| || | |||||||| |||||||| |||| || || ||||||||||| || | Sbjct 3938 CCTGCTTCCTATTGGCCATGCAGGACGACTCCATCGAGGGTATCTATGACACGCTCAAGC 3997 Query 249101 AGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAG 249160 || || || || || | ||||| || ||||| || | | |||||| || | Sbjct 3998 AGTGCGCCTGCATCTCCAAGTGGGCGGGGGGTATCGGCATCAGCATGCACAACATTCGCG 4057 Query 249161 CGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTC 249220 | | ||||| ||| || || || | | || ||| | ||| | || | Sbjct 4058 CCACCAACAGCTACATTCGAGGCACCAACGGCTCCTCCAACGGCATCATCCCCATGCTGC 4117 Query 249221 GATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGT 249277 | || | ||| ||| ||| | | |||||| ||| || || ||||| | Sbjct 4118 GCGTGTTCAACGACACGGCCCGGTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCAGCT 4177 Query 249278 TCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGA 249337 ||||||| || | || ||||||||||| | || |||||||||||| || |||| Sbjct 4178 TCGCCATCTACCTCGAGCCCTGGCACGCCGACGTGTTCGAGTTCCTGGACCTGCGCAAGA 4237 Query 249338 ACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACT 249397 || ||||||||||||| | || || ||||| ||||||| |||||||| ||||| Sbjct 4238 ACCACGGCAACGAGCTGCACCGTGCCCGCGACCTGTTCTACGCGCTGTGGGTGCCCGACC 4297 Query 249398 TGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTT-TCTCCGTCCGACGCC 249456 |||||||| ||||| ||||| ||||| | |||| | || || | || ||| ||| Sbjct 4298 TGTTCATGAAGCGCGTGGAGGCCAACGGCAAGTGGA-GTTTGTTCTGCCCCAACGAGGCC 4356 Query 249457 CCGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGCCTATA--AGAAATACGAAT 249514 || | ||| ||| || | ||| || || ||||| || | || ||||| Sbjct 4357 CCCGGGCTCTACGAGTGCTGGGGGGACGAGTTTGA--GAGCCTCTACGACAAGTACGAGC 4414 Query 249515 CCAACGGCATCG---GCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGG 249568 | | ||| || ||||||| ||||| || | | || || || | | ||| Sbjct 4415 GCGAGGGCCGCGCCCGCAAGACCATCAACGCGCAGCAGCTGTGGTTCGCCA---TCCTGG 4471 Query 249569 AGTCCCAGATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAG 249627 | | ||||| ||||| || | ||| | | || | | ||| |||||| |||| |||| Sbjct 4472 ACGCGCAGATCGAGACGGGCGTGCCCT-TCATGCTCTACAAGGACGCGGCCAACCGCAAG 4530 Query 249628 AGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTG-TGCAGAGGTGATTCA 249686 ||||| | | | || || ||||||||||| || || || ||| |||||||| | Sbjct 4531 TCCAACCAGCAGAACCTCGGCACCATCCGCTCCAGCAACCTGTGCTGC-GAGGTGATGGA 4589 Query 249687 ATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGCAAGCATCAATCTCGTGAGGCA 249746 ||| ||||| || ||| | ||||| ||||||||||| | | || | | Sbjct 4590 GTACACGTCCCCCGACGAGGTGGCCGTGTGCAACCTGGCCTCCGTGGCGCTGCCCAAGTT 4649 Query 249747 CGTGAGGGCGGACAGGACGTTCGACTTCGAGCGTCTTCACCGGACGGCGAAACAGGCGAT 249806 ||| || ||| | |||||||| | || || || | | || || || Sbjct 4650 CGT---GGACGACGGCGTGTTCGACTACCAGAAACTCTACGAGGTCACCAAGGTGGTGAC 4706 Query 249807 CAAAAACCTCAACAAGGTGATTGATGTCAATTTTTACCCCCT---TGAGGAATGCAGGTT 249863 | |||||||||||||| || || || || | || ||| | |||| ||| Sbjct 4707 CCGCAACCTCAACAAGGTCATCGACGTTAACTACTATCCCGTGGCCGAGGCGCGCA---A 4763 Query 249864 GTCCAACATGAAGCACCGTCCATGTGGGCTGGGCGTTCAGGCACTGCACGACGTCTACAT 249923 |||||||||| ||||| || || | ||||| |||| || |||| || ||| Sbjct 4764 GTCCAACATGCGCCACCGCCCCATCGGCATCGGCGTCCAGGGCCTCGCGGACGCCTTCAT 4823 Query 249924 GGTGATGGGATTCCCCTTCGAGTCAGAGGAGG-CAGCGACGCTAAATAAACAGATTTTCG 249982 | ||| | | | |||||| ||| ||| | |||| ||| || || | || |||| Sbjct 4824 CCTCATGAACTACGCGTTCGAGAGCGAGCAGGCCCGCGA-GCTCAACAAGAACATCTTCG 4882 Query 249983 AGACCATCTATCACGGGAGCGTCGAGGCGTCCATCGAAAGGGCCAAGATCGACGGACCAT 250042 |||| ||||| ||| ||||||| ||||||| || | |||||| ||| || | Sbjct 4883 AGACGATCTACTACGCCGCCGTCGAGACGTCCATGGAGATTGCCAAGGAGCTCGGCCCCT 4942 Query 250043 ACGAGAGTTTTCAGGGGTCGCCCGC 250067 |||||| || ||||| ||||| || Sbjct 4943 ACGAGACGTTCCAGGGCTCGCCGGC 4967 >seq5612 Length=1235 Score = 150 bits (166), Expect = 4e-31 Identities = 414/619 (67%), Gaps = 18/619 (3%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || |||| |||| ||||||| |||| | |||||||| ||||||||||| ||||| || Sbjct 275 ACGCCGGCCTTGGAGTACTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCCTGCAGC 334 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGC 157363 || |||||||||||||| ||||| ||||| | |||||| | |||| ||||| Sbjct 335 GAGATCATGTCCATCCAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACGCCCAGT 394 Query 157364 TGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATA 157423 || |||| | ||| ||||| |||| |||||||| |||| | | | | || Sbjct 395 GAGTACAGCAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATG 454 Query 157424 CCGATGAGCGCGACGGGAAGCGCCGACGAAATGAATTCGCACTCAACGCTAACAGCGTGC 157483 || |||||| | || || |||| | | ||| ||| ||||| || |||| Sbjct 455 CCAATGAGCTCCACAGGCAGCGAATCGCACACGAACTCGTGCTCAATCACCACCGCGTCG 514 Query 157484 TTGAAAATTTCATGAACTC-TCTCCCGCGGCAGCCTATTCTTGAGATGCTTGTAGATGA- 157541 | || || || || | || || |||||| | || ||| | | ||| |||| Sbjct 515 CGCACGATCTCGTGCACGCGGCTTTCG-GGCAGCTTGTTGACGAGCTTCGAGTACATGAG 573 Query 157542 GAACG-GAAG-CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGA 157599 | ||| |||| |||| ||| | |||||||||| | |||||| ||||| ||| Sbjct 574 GCACGCGAAGTCCGT---GTGCATACCTTCGTCTCGGCTGATGAGCTCGTTCGAGAAGCT 630 Query 157600 CAAACC---CTTGAACTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACT 157656 || ||| | ||| | | |||||||| |||||| |||||| ||||||||| || Sbjct 631 CAGACCAGGCATGA--GGCCG-CGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGA 687 Query 157657 GAACTGCACGCCCTCCA-GACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAAG-CGGTT 157714 ||| | |||||||| | || | ||| | | || | ||||| | || | | | Sbjct 688 GAAAAAGATGCCCTCCACGGCA-GCGAACGCCAGCAGACGCTCCGGGTACGACGACACTC 746 Query 157715 TCGGGGTTCATCCACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCATCGTCTGG 157774 |||| || |||||| |||||| |||| ||||| | || | || ||||||| | Sbjct 747 GCGGGTCGCA-CCACTTGAGCGCCCAGTGCGCTTTCTTCTTGACGCACGGGATCGTCTCG 805 Query 157775 ATAGATCGCATGACGTGTCTCTGCTCTTCCGTGTCCCTGAAGTAAGTCTGAATAAGCAGA 157834 || | |||| | ||| ||| ||| ||||||| ||| ||| || | ||| ||||| Sbjct 806 ATGGCACGCAGCAGGTGGTTCTTCTCCATCGTGTCCTTGATGTAGGTATCAATGAGCAGC 865 Query 157835 GAGTACGATTCGCCGTGGA 157853 |||||| ||| |||||| Sbjct 866 GAGTACACCTCGGCGTGGA 884 >seq115 Length=60420 Score = 145 bits (160), Expect = 2e-29 Identities = 266/387 (69%), Gaps = 6/387 (2%) Strand=Plus/Plus Query 253995 GGCGACCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATC 254054 ||| | || || || ||||| ||| | || || || || || ||||||||||| ||||| Sbjct 47363 GGCCAGCTGCCCCACTTGCTGTTCTATGGACCCCCGGGCACGGGCAAGACGTCCACCATT 47422 Query 254055 CTGGCGCTGGCCCGAACCCTGTTGGGCGAGGGGAAC---ATGAGAGAGCGCGTGCTCGAG 254111 ||||| ||| || || || ||| || | | || | ||| | | ||| Sbjct 47423 GTGGCGGTGGGGCGCCAGCTCTTCGGCCCGGACTTCCGCAAGAACGGCCGCTTCTTGGAG 47482 Query 254112 CTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCC 254171 |||||||| || ||||| || || | | || || ||||| ||| |||||| ||| || Sbjct 47483 CTGAACGCGTCGGACGACCGAGGCATCAAGGTGGTGCGCGAGAAGGTCAAGAGCTTCGCC 47542 Query 254172 AAGATGTCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGAC 254231 || | || | | ||| | ||| |||||| |||||| || | | ||||| Sbjct 47543 CAGGGTGCCATCA-GCAGCGCCAGC--GGCCTTCCGCCCTTCAAGATCATTGTGCTGGAT 47599 Query 254232 GAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCAC 254291 ||||| ||| ||||||||| |||||||||||| || || || || | |||||||| || Sbjct 47600 GAGGCCGACTCCATGACGGGCGACGCGCAGTCGGCGCTGCGTCGCATGATGGAGAACTAC 47659 Query 254292 TCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCCCCGCTG 254351 ||| || ||||| || ||||| | || ||||||||| ||||||| || || Sbjct 47660 TCCAAGGTAACGCGCTTCTGCCTCATCTGTAACTACGTGAGCCGCATCATCGAGCCTGTG 47719 Query 254352 GCTTCTCGGTGCGCCAAGTTTCGATTC 254378 || || || |||||||| ||||| ||| Sbjct 47720 GCCTCCCGATGCGCCAAATTTCGTTTC 47746 >seq374 Length=32324 Score = 107 bits (118), Expect = 4e-18 Identities = 120/158 (76%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || |||| |||| ||||||| |||| | ||||| || ||||||||||| ||||||||| Sbjct 1307 ACGCCGGCCTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGA 1366 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTAC-CCCAG 157362 || |||||||||||||| ||||| ||||| |||||| | ||| | | || ||||| Sbjct 1367 GAGATCATGTCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTT-TGGCACACCCAG 1425 Query 157363 CTGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTACT 157400 | || || | ||| ||||| |||| |||||||| Sbjct 1426 CGAGTACAACAGACGGTCGGCCACGAACTCGATGTACT 1463 >seq84 Length=67297 Score = 95.1 bits (104), Expect = 3e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 115402 ATCGCACATCTGCTCTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATG 115461 || || || | |||||| || || |||||||| ||||| |||||||||||| | | | Sbjct 15472 ATGGCGCAGCGGCTCTGGATGGGCTCGATGATCTTGGTCGAGTTGTTGCAGGCCAGCGCG 15413 Query 115462 AACCGCGTCGTGCTCGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAGGT 115521 || ||||| ||| |||| | | |||||| | || ||||||||||| || | | Sbjct 15412 AAGCGCGTGGTGGCCGAGAAGATCTCCATGGTGCGGCGCAGCGCCTGCTGGGCCGCGGCC 15353 Query 115522 GTCATCGAGTCTGCCTCGTCGAGAACGACAATCTT 115556 ||||||||||| |||||||| || | || ||||| Sbjct 15352 GTCATCGAGTCGGCCTCGTCCAGGATCACGATCTT 15318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073680139647360