Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq54 125 6e-24 seq14 125 6e-24 seq710 123 2e-23 seq50 87.8 1e-12 >seq54 Length=76991 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| |||| ||| |||| || Sbjct 57072 ACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCA 57013 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| ||||| || || | ||||||||||| | Sbjct 57012 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGA 56953 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| || | | |||| |||||| |||| || ||||||||| Sbjct 56952 ATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTG 56893 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || ||||| |||||||| ||||| ||||| || Sbjct 56892 CCGGTCAGCGTCTTCACGAAGATCTGCATCTT 56861 >seq14 Length=110323 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| ||||||||| |||||||||||| |||| ||| |||| || Sbjct 101116 ACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCA 101057 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| ||||| || || | |||||||||||| | Sbjct 101056 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGA 100997 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| || | | |||| |||||| || | || || |||||| Sbjct 100996 ATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTG 100937 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| ||||| Sbjct 100936 CCGGTCAGCGTCTTCACGAAGATCTGCAT 100908 >seq710 Length=19765 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 ||||||| ||||||||||| || ||| |||| || || || || |||||||| | Sbjct 5324 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 5383 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 ||| ||||| ||||| || || | |||||||||||| ||||| ||||| || Sbjct 5384 TCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 5443 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | |||||| |||||| |||| || || |||||||||||||| |||||||||| Sbjct 5444 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 5503 Query 45327 AGATTTGCATG 45337 |||| |||||| Sbjct 5504 AGATCTGCATG 5514 >seq50 Length=78893 Score = 87.8 bits (96), Expect = 1e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||||||||||||||| ||||||||||| || ||| |||| ||| Sbjct 18482 ACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCC 18541 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || || |||||||| |||| ||||| ||||| || || Sbjct 18542 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 18582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395045010081670