Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq498 360 2e-94 seq374 251 6e-62 seq54 154 1e-32 seq14 134 1e-26 seq710 122 8e-23 >seq498 Length=26695 Score = 360 bits (398), Expect = 2e-94 Identities = 998/1521 (66%), Gaps = 23/1521 (2%) Strand=Plus/Minus Query 22466 AACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCA 22525 ||||| |||| || || ||||| | ||| |||||||| ||| | || |||| || || Sbjct 5189 AACTCACCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGTAGGGCTCGATGGACTCG 5130 Query 22526 TTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTT 22585 ||||| || || ||||| || || ||||| || ||||| || |||| ||| |||||||| Sbjct 5129 TTGTTGCCTAGGATCTGGGCCGTGGAAGCCGTGGGCATGGGGGCCACCAGCAGCGAGTTG 5070 Query 22586 CTCAAGCCGTGCTTTGAAATTTTACTC-TTGAGCATCGACCAGTCCCACAGATC---GGA 22641 | | ||||| ||||| | ||| |||||| || ||||| ||| ||| | ||| Sbjct 5069 CGAAGACCGTG-TTTGACCACGTTCTCCTTGAGCGCCGCCCAGTTCCAGAGACCCGAGGA 5011 Query 22642 CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTC 22701 ||| || || | ||||||| ||| | || || | || || ||||| ||| | Sbjct 5010 CGGGGTGAC---GCCCCACATGTCGAACTGGAAGATCCCCTTGCTGGCCGGCGAGCCCTG 4954 Query 22702 GTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTA 22761 | |||| ||||| || || | ||||| || | || ||| | ||| |||| Sbjct 4953 GAACGTCTCGTAGGGGCCGAGCTCCTTGGCAATCTCCATGGACGTCTCGACGGCGGCGTA 4894 Query 22762 ATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCAT 22821 || || ||||||||||| |||||||| | ||| ||| |||| ||| || || | Sbjct 4893 GTAGATCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCCTGCTCGCTCTCGAAC-GCGT 4835 Query 22822 A-CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTT 22880 | ||| | | ||| |||||||| | ||||| ||||| || ||||| || |||| Sbjct 4834 AGTTCATGAGGATGAAGGCGTCCGCGAGGCCCTGGACGCCGATGCCGATGGGGCGGTGGC 4775 Query 22881 TCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCA 22940 || || ||| ||||||| || ||||| | || ||||| |||| | Sbjct 4774 GCATGTTGGACTTGCGCGCCTCGGCCACGGGATAGTAGTTAACGTCGATGACCTTGTTGA 4715 Query 22941 AGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATT 23000 ||| | |||||| | || || | | ||||| | ||||| | Sbjct 4714 GGTTGCGGGTCACCACCTTGGTGACCTCGTAGAGTTTCTGGTAGTCGAACACGCC--GTC 4657 Query 23001 GTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGG 23060 || | || |||||| | || | ||||| || ||||| |||||||||||||| || Sbjct 4656 GT-CCACGAACTTGGGCAGCGCCACGGAGGCCAGGTTGCACACGGCCACCTCGTCGGGGG 4598 Query 23061 ACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCT 23120 |||||||||| | | ||| || || ||||| | || ||||| | || || Sbjct 4597 ACGTGTACTCCATCACCTCGCAGCACAGGTTGCTGGAGCGGATGGTGCCGAGGTTCTGCT 4538 Query 23121 GGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCT 23180 ||||| || || ||| || ||||||||||||||| | ||| ||||||||||| || Sbjct 4537 GGTTGGACTTGCGGTTGGCCGCGTCCTTGTAGAGCATGAAGGGCACGCCCGTCTCGATCT 4478 Query 23181 GCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTAC-CTGCCT 23239 ||| || | ||| || ||||| ||| |||| | ||| || | | ||| Sbjct 4477 GCGCGTCCAGGATGGCGAACCACAGCTGCTGCGCGTTGA-TGGTCTTGCGGGCGCGGCCC 4419 Query 23240 TCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCG 23299 || ||||||||| | ||| | ||||| ||| | || | || ||| || ||| Sbjct 4418 TCGCGCTCGTACTTGTCGTAGAGGCTCTCAAACTCGTCCCCCCAGCACTCGTAGAGCCCG 4359 Query 23300 GGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAA 23359 || | | | || || | | ||||||| | || || ||||| |||| || Sbjct 4358 GGGGCCTCGTTGGGGCAGAACAAACTCCACTTGCCGTTGGCCTCCACGCGCTTCATGAAC 4299 Query 23360 AGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTG 23419 || || || | ||| || ||||||||||| |||||||| || | ||| |||||| | Sbjct 4298 AGGTCGGGCACCCACAGCGCGTAGAACAGGTCGCGGGCACGGTGCAGCTCGTTGCCGTGG 4239 Query 23420 TTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCA 23479 ||||| || |||| || || |||||||| || ||||| ||||||||||| | ||| Sbjct 4238 TTCTTGCGCAGGTCCAGGAACTCGAACACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCG 4179 Query 23480 AACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACT 23539 || |||| | ||| ||||||||| || ||||| |||||||||| |||| |||| Sbjct 4178 AAGCTGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTACCGGGCCGTGTCGTTGAACACG 4119 Query 23540 CTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTT 23599 | ||||| || | || |||||||| | |||| | | ||| | | | || || Sbjct 4118 CGCAGCATGGGGATGATGCCGTTGGAGGAGCCG--TTGG--TGCCTCGAATGTAGCTGTT 4063 Query 23600 ----GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGC 23655 || |||| |||||| | | || || || || || || | || || || || Sbjct 4062 GGTGGCGCGAATGTTGTGCATGCTGATGCCGATACCCCCCGCCCACTTGGAGATGCAGGC 4003 Query 23656 GCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAA 23715 ||| || || || ||||| ||||| ||||||||| ||| || | | || | | ||| Sbjct 4002 GCACTGCTTGAGCGTGTCATAGATACCCTCGATGGAGTCGTCCTGCATGGCCAATAGGAA 3943 Query 23716 ACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGT 23775 || || |||| |||| ||||| |||| ||||| ||||| | |||||||| Sbjct 3942 GCAGGAGGACAGCTGCGGACGCGGCGTTCCGGCGTTAAACAGCGTCGGCGTCGCGTGCGT 3883 Query 23776 AAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTG 23835 ||| | | |||||| || | |||||| || | ||||| | ||||| | ||| Sbjct 3882 GAAGAACTTCTGCGACATGAGCTCGTACGTCTCCAGCGCGGCCTGGATGTCGGCCTTGTG 3823 Query 23836 TATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAAT 23895 || || | || |||||||| ||||| | || || | ||| ||| |||||| | Sbjct 3822 GATGCCCAGCGCCACGCGCATAATCATTTGCTGCGGACGCTCCACCACCTTGCCGTTTAC 3763 Query 23896 TTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACG 23955 ||| || || || | | |||||||| || || ||||| || | ||||| || Sbjct 3762 GCGGAAGAGGTAGCCGCGCTCGAGTGTTTTAAACCCGAAGTAGTCGTACTCGAAGTCGCG 3703 Query 23956 ATCGTGCACTATGGCCGAATT 23976 ||||| | |||||||| || Sbjct 3702 GTCGTGGATGATGGCCGAGTT 3682 >seq374 Length=32324 Score = 251 bits (278), Expect = 6e-62 Identities = 569/838 (68%), Gaps = 22/838 (3%) Strand=Plus/Minus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 ||| | ||| | |||||||| ||||| || || ||||| ||||| | ||| || | ||| Sbjct 2163 GACGTGTGGCAGATGTACAAGAAGGCCGAGGCCTCGTTCTGGACGGCCGAGGAGCTGGAC 2104 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 ||| | || || | || |||| ||| | || ||| | || || || Sbjct 2103 CTGGTGCACGACCTCAAGGACTGGGCGAACCTGACGGACAACGAGCGGTTCTTCATCAAG 2044 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 |||||| ||||||| ||||| || ||| |||||||| |||||||| ||| | | || Sbjct 2043 CACGTGCTGGCGTTCTTCGCTGCGAGCGACGGTATTGTGAACGAGAACCTGGCC--ATGA 1986 Query 57747 TTTTCA-CAA-GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 |||| ||| |||||||| ||| ||||||| | ||||| ||||| || || | |||| Sbjct 1985 ACTTCAGCAATGAAGTGCAGGTGCCGGAGGCTCGCTGCTTCTACGGCTTCCAGATCGCCA 1926 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864 | || ||| | || || || |||| ||||| || ||||| |||||| | |||||| || Sbjct 1925 TCGAGAACATCCACTCGGAGGTGTACTCGCTGCTGATCGACACGTACATCAAGGACGCCG 1866 Query 57865 ACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAG 57924 ||||| ||| | ||||||||| || || |||| | || |||||| || Sbjct 1865 TGGAGAAGGACCACCTGCTGCGCGCGATCGAGACGAT-CCCGTG--CGTGAAGAAGAAAG 1809 Query 57925 AG---TGGTCAATCAAATGGATAAAAAGCGCCACGGCCA-CGTTCGCCGAGAGGCTAATC 57980 | ||| | |||| ||| | | ||| | | ||| | | ||| | || | Sbjct 1808 CGCACTGGGCGCTCAAGTGG-TGCGACCCGCGTGTGTCGTCGTACCCGGAGCGTCTGCTG 1750 Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGAT 58039 |||||||||||||| || || || ||||| |||||| ||| ||| | || || ||| | Sbjct 1749 GCGTTCGCCGCCGTGGAGGGCATTTTCTTCTCGGGCTCCTTCTGC-TCCATCTTCTGGCT 1691 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 ||||| |||||||| ||||| ||||||| || |||||| |||| || ||||| Sbjct 1690 CAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGA 1631 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCG 58159 |||| | || || || || |||||||| |||||||| | | || || || | | || Sbjct 1630 GGGTATGCACACGGACTTCGCGTGCCTCATGTACTCCAAGCTGGTGAACAAGCTGCCGGA 1571 Query 58160 GGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGA 58219 | ||| | || ||| | ||| ||||| | |||||| | ||||| || ||| Sbjct 1570 GAGCCGCGTGCACGAGATTGTGCGCGACGCGGTGGTGATCGAGCACGAGTTCGTGCGCGA 1511 Query 58220 AGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTT 58279 | || || |||| || |||| |||||| | | |||| ||||||| ||||| Sbjct 1510 CTCGCTCCCTGTGGAGCTGATCGGCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTT 1451 Query 58280 TGTTGCCGACAGACTTTTG--CTCGAACTGATTG-GAGAGCG-TCATTACAACACGAAAA 58335 || |||||| | || ||| |||| ||| || | | | || |||||| ||| | Sbjct 1450 CGTGGCCGACCGTCTGTTGTACTCG--CTGGGTGTGCCAAAGATC--TACAACGTGAAGA 1395 Query 58336 ATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 | ||||| || | ||| | ||||||| ||| |||||||||| ||||| ||||| || Sbjct 1394 ACCCGTTCGACTGGATGGACATGATCTCTCTCCAGGGCAAGACCAACTTCTTCGAGAA 1337 >seq54 Length=76991 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| ||||| ||||| |||||||| | ||||| || ||| Sbjct 56861 AAGATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCG 56920 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || ||| |||| | || || |||| ||| |||||||| ||| | ||||| ||| Sbjct 56921 TCGGACTCGATCGACAACGTGAAGCAGAAAATTCAAGACAAGGAGGGCATCCCGCCTGAC 56980 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||||||||| ||| | || ||| || ||||||| || Sbjct 56981 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACTAC 57040 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || ||||||||||| ||||| ||| | || | ||||| Sbjct 57041 AACATCCAGAAGGAGTCGACTCTTCACCTGGTGCTTCGTCTTCGTGGCGG 57090 >seq14 Length=110323 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || ||||| ||||||| || ||||| Sbjct 100908 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 100967 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| |||| | || || |||| || ||||||||| ||| | ||||| |||||| Sbjct 100968 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 101027 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||||||||| ||| | |||||| || ||||||| || ||| Sbjct 101028 CAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACTACAAC 101087 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || || || || ||||| || Sbjct 101088 ATCCAGAAGGAGTCTACGCTGCACCTGGTGCT 101119 >seq710 Length=19765 Score = 122 bits (134), Expect = 8e-23 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || || || ||||| ||||| ||||| || ||||| | ||||| || || Sbjct 5517 AATCATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCC 5458 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||||| | || | ||||| |||| ||| ||||||||| ||| | ||||| || Sbjct 5457 GTCCGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGA 5398 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||| || || ||||| ||||| ||| | || ||| Sbjct 5397 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGAC 5358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445731463058400