Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq498 95.1 2e-14 seq2085 87.8 4e-12 >seq498 Length=26695 Score = 95.1 bits (104), Expect = 2e-14 Identities = 181/264 (69%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 94782 GATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAAT 94841 |||||||| || || || |||||||||| || || ||| || || ||||| || Sbjct 4038 GATGCCGATACCCCCCGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGAT 3979 Query 94842 ACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGT-GTGA 94900 |||||| ||| || || || | | ||| |||||||| ||||| || || || | | Sbjct 3978 ACCCTCGATGGAGTCGTCCTGCATGGCCAATAGGAAGCAGGAGGACAGCTGCGGACGCGG 3919 Query 94901 CTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGAT 94960 | ||||| |||||||| || || | || || || || | | | ||||||||| | Sbjct 3918 C-GTTCCGGCGTTAAACAGCGTCGGCGTCGCGTGCGTGAAGAACTTCTGCGACATGAGCT 3860 Query 94961 CATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAA 95020 | || || || | | | | |||||| | ||| ||||| | ||||| ||||||| Sbjct 3859 CGTACGTCTCCAGCGCGGCCTGGATGTCGGCCTTGTGGATGCCCAGCGCCACGCGCATAA 3800 Query 95021 TCATGTCCTGAGGGCGCTCAACCA 95044 |||| | ||| || ||||| |||| Sbjct 3799 TCATTTGCTGCGGACGCTCCACCA 3776 >seq2085 Length=5363 Score = 87.8 bits (96), Expect = 4e-12 Identities = 364/563 (65%), Gaps = 16/563 (3%) Strand=Plus/Plus Query 35231 CTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGG 35290 ||||| |||||| | |||||| | || || | || || || |||||||||||| Sbjct 4457 CTCACGACCAAGCGCGTGTTCTGGCGCGGCGTGGCCGAGGAGCTGCTGTGGTTCATCAGC 4516 Query 35291 GGCAATACAGACGCCAAAGAATTGGCCAAGAAGAAGATACACATCTGGAACGCTAATGGG 35350 ||| | || ||| | || ||||| | || ||||||||| ||| |||| | Sbjct 4517 GGCGACACCAGCGCGCACACGCTGCAGCAGAAGGACATCCACATCTGGGACGGCAATGCG 4576 Query 35351 TCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCC 35410 ||||| || | | |||||||| ||||| | | | ||| | ||| || | ||||| Sbjct 4577 TCGCGCGAGTATCTGGACAGTCGAGGGCTGCAGGCGCGAGAGGTGGGCGACCTCGGACCG 4636 Query 35411 GTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATA-TGATACCTGTTCTTCCGATTA 35469 || ||||| ||||| ||||| |||||||| || | || || || | ||||||| Sbjct 4637 GTCTACGGCTTCCAGTGGCGGCATTTTGGCGCCAAGTACACGGACATG-CATGCCGATTA 4695 Query 35470 TACTGGAAAGGGTATTGATCAATT---GGCCAATATACTAAAGACCCTGAGAGAAAATCC 35526 ||||| |||| | || || | || ||| | ||| ||| | || || Sbjct 4696 CACTGGCCAGGGCGTGGACCAGCTCGCGGGGGTTATCCACAAG---CTGCGCACGAACCC 4752 Query 35527 AGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCT 35586 || | | || | || |||| |||||||| |||||| | ||||| || Sbjct 4753 GACGGACCGCCGCATCGTGCTGTCGGCGTGGAATCCGGCGGATCTCAATGAGATGGCGCT 4812 Query 35587 TCCTCCATGCCACATG-ACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGT 35645 || || ||||||||| |||| || || || ||||| | || || | || |||||| Sbjct 4813 CCCGCCGTGCCACATGTTCTGC-CAGTTCTACGTGGCCGACGGCGAGCTTTCCTGCCAGA 4871 Query 35646 TGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTC 35703 |||| ||||| || || ||| || | |||||||| |||||||| || ||| | Sbjct 4872 TGTACCAGCGCTCGGCCGACATG--GGACTTGGCGTGCCGTTCAATATCGCTAGCTACGC 4929 Query 35704 TCTTCTGACTCATCTGATGGC-CAGTATGGTGGGTCTAAAACCGGGAGAGTTTATCCTCA 35762 | || || | ||| | || ||| ||| || | || || ||||||||| | | | Sbjct 4930 ATTGCTTACGCGACTGGTTGCGCAG-GTGGCTGGATTGAAGCCTGGAGAGTTTGTTCACG 4988 Query 35763 CTCTTGGTGACGCACACATTTAT 35785 | |||| || || ||| | ||| Sbjct 4989 TTATTGGAGATGCCCACGTGTAT 5011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989504502387850