Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq2085 206 2e-48 >seq2085 Length=5363 Score = 206 bits (228), Expect = 2e-48 Identities = 474/705 (67%), Gaps = 33/705 (5%) Strand=Plus/Minus Query 20888 CGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTA 20947 ||| ||||||||||| || | ||||| | | || || || || || || || Sbjct 5068 CGGGAACGGACGCGGTGTTCGAGTAAGCTGCTTCTGGAGCGGCTCGACATGATTCAGATA 5009 Query 20948 AACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGC 21007 |||||||| || || | ||| ||||| ||||| || ||| || | || || || Sbjct 5008 CACGTGGGCATCTCCAATAACGTGAACAAACTCTCCAGGCTTCAATCCAGCCACCTGCGC 4949 Query 21008 GATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTC 21067 | ||| ||| || | |||||||| ||||| || ||||| || || || |||||||| Sbjct 4948 AACCAGTCGCGTAAGCAATGCGTAGCTAGCGATATTGAACGGCACGCCAAGTCCCATGTC 4889 Query 21068 GGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAA 21127 ||| || | |||||||| ||||||||| ||||| || |||||||| ||||| || || Sbjct 4888 GGCCGAGCGCTGGTACATCTGGCAGGAAAGCTCGCCGTCGGCCACGTAGAACTGGCAGAA 4829 Query 21128 AACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAAC 21187 | ||| || || ||||| |||||| ||| ||||| || |||||||| ||| || Sbjct 4828 CATGTGGCACGGCGGGAGCGCCATCTCATTGAGATCCGCCGGATTCCACGCCGACAGCAC 4769 Query 21188 GATGCGCCGAT-CGTGGG--------GCCGCCTGTTAATTAGATCCACCACGTAACGCAG 21238 |||||| || | ||| || || || ||| || | || || || || Sbjct 4768 GATGCGGCGGTCCGTCGGGTTCGTGCGCAGCTTGTGGAT---AACCCCCGCG------AG 4718 Query 21239 CTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATG 21298 ||||||||| ||||| || ||| | ||| | || |||||| || |||||||| Sbjct 4717 CTGGTCCACGCCCTGGCCAGTGTAATCGGCATGCATGTCCGTGTACTTGGCGCCAAAATG 4658 Query 21299 TCTCCACTGGAACCCGTACACCGGCCCCAGATCGC---CCTCGCGGCGGTCCCCGAAGCC 21355 | ||||||||| ||||| ||||| || || |||| |||| | ||| || | |||| Sbjct 4657 CCGCCACTGGAAGCCGTAGACCGGTCCGAGGTCGCCCACCTCTC-GCG---CCTGCAGCC 4602 Query 21356 CTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGCG 21414 || | | ||| | | |||| ||| | | ||||||| || | | | | || Sbjct 4601 CTCGACTGTCCAGATACTCGCGCGACGCATTGCCGTCCCAGATGTGGATGTCCTTCTGCT 4542 Query 21415 ACAGTTCG-GTG-GAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCC 21472 ||| || ||| | | |||| ||| ||||| |||||||||| |||||| | ||||| Sbjct 4541 GCAG--CGTGTGCGCGCTGGTGTCGCCGCTGATGAACCACAGCAGCTCCTCGGCCACGCC 4484 Query 21473 CCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAAC---TCGTCCCTGAGGTTATATCG 21529 | ||| ||||| | ||||| || | ||| || ||| | |||||||||| | | || Sbjct 4483 GCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGGAACACGTTGTCCCTGAGGCTGAACCG 4424 Query 21530 GGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCTGTC 21574 ||| ||||| || ||| |||||| ||||| | ||| Sbjct 4423 CATCTGCGCGCCGAAGACCGACAGCGTGCCCGTCCCCGTGCGGTC 4379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427743311229600