Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq54 122 9e-23 seq14 118 1e-21 seq374 87.8 2e-12 >seq54 Length=76991 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | || | ||||| || ||||| || || ||||| || |||||| Sbjct 57090 CCGCCACGAAGACGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 57031 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| || ||||| || ||||| |||||||||| ||||| || || || Sbjct 57030 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 56971 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||||| || || | | || | | ||| | |||||||| Sbjct 56970 ATGCCCTCCTTGTCTTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 56911 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | |||||||||||||| ||| || ||||| || ||||| Sbjct 56910 TCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 56864 >seq14 Length=110323 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| || | ||| | ||||||||| || || ||||| || ||||| Sbjct 101135 GCCACCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 101076 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||| ||||| || ||||| ||||||| || ||||| || || || Sbjct 101075 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGG 101016 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| || || || || | | || | | ||| | |||||||| Sbjct 101015 GATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 100956 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||||||||||| ||| || ||||| || ||||| Sbjct 100955 GTCGAGCGTGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 100908 >seq374 Length=32324 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 52894 GGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATG 52953 ||||||||| || | | |||||| ||||||||||||| || || ||| | |||||| Sbjct 1488 GGCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGTTGTAC 1429 Query 52954 CAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATA 53013 ||| ||| ||| || ||| || | | ||||| || | ||| ||| || Sbjct 1428 TCGCTGGGTGTGCCAAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGACATGATC 1369 Query 53014 TCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 || ||| ||||||| || ||||| ||||||| || |||||||||||| Sbjct 1368 TCTCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTAC 1321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496025120984000