Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq374 187 4e-42 seq5612 161 1e-34 seq498 145 1e-29 seq182 107 3e-18 >seq374 Length=32324 Score = 187 bits (206), Expect = 4e-42 Identities = 586/888 (66%), Gaps = 36/888 (4%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| || ||| | | || ||| | ||| | |||||||| ||||| ||||||| || Sbjct 2184 CTGTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCCGAGGCCTCGTTC 2125 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| ||| | || ||| | ||||| | || |||| || | |||| Sbjct 2124 TGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTCAAGGACTGGGCGAACC---TGACG 2068 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || | ||||| || || |||| | |||| ||||| || | ||| || || Sbjct 2067 GACAACGAGCGGTTCTTCATCAAGCACGTGCTGGCGTTCTTCGCTGCGAGCGACGGTATT 2008 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCT-CAA-GAGTTGACCATTCCAGAGGTGTCG- 125231 || ||||| || ||| | || || || ||| || || | || |||| ||| Sbjct 2007 GTGAACGAGAACCTG--GCCATGAACTTCAGCAATGAAGTGCAGGTGCCGGAGGC-TCGC 1951 Query 125232 TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 ||||| ||||| ||||| ||| || |||||| | |||||||| ||||||| ||| Sbjct 1950 TGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTGTACTCGCTGCTG 1891 Query 125292 ATTGACATGTACATTCGCGAT-CCGCAACGTA--AACACATGCTCTTTAACGCAATCGAC 125348 || |||| |||||| || ||| | | | ||| |||| ||| ||||| Sbjct 1890 ATCGACACGTACATCAAGGACGCCGTGGAGAAGGACCACCTGCTGCG---CGCGATCGAG 1834 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 ||| | |||| | || || || || |||| | | |||| ||| | Sbjct 1833 ACGATCCCGTGCGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGTGTG 1774 Query 125409 TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG- 125467 || |||||| | || | ||| |||| ||||||||||| |||||||| ||||| ||||| Sbjct 1773 TCGTCGTACCCGGAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTTCTTCTCGGGC 1714 Query 125468 TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAG 125527 | || ||| ||||||| ||||||||||||||||| |||||||| || |||| | Sbjct 1713 TCCTTCTGCT-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTC 1655 Query 125528 TAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCG 125587 |||||| | || || |||||||| | ||| ||||| || || ||| Sbjct 1654 GAACGAGCTGATCAGCCGTGACGAGGGTATGCACACGGACTTCGCGTGCCTCATGTACTC 1595 Query 125588 CAACTATCTGCGTCCCGAG-TGC---AGATCCAGCGATGAAAAGGTCATCAACATTGTAA 125643 ||| ||| | || ||| ||| || ||| || | | | ||||| Sbjct 1594 CAAG---CTGGTGAACAAGCTGCCGGAGAGCC-GCG-TGCA--------CGAGATTGTGC 1548 Query 125644 CCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCATGATT 125702 ||| || ||| ||| || || ||||| | ||| || || || || ||| |||| Sbjct 1547 GCGACGCGGTGGTGATCGAGCACGAGTTCGTGCGCGACTCGCTCCCTGTGGAGC-TGATC 1489 Query 125703 GGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTAC 125762 |||||||||| ||| |||||| ||||||| ||||| ||||| || ||||| ||||| Sbjct 1488 GGCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGTTGTAC 1429 Query 125763 GAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATA 125822 | || || | ||||| ||||||| ||||| || || || | ||| || || Sbjct 1428 TCGCTGGGTGTGCCAAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGACATGATC 1369 Query 125823 TCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || || |||| ||||||||||| ||||||||| || |||||||| Sbjct 1368 TCTCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTAC 1321 >seq5612 Length=1235 Score = 161 bits (178), Expect = 1e-34 Identities = 601/918 (65%), Gaps = 57/918 (6%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| | ||| | | || ||| | ||| | || ||||| ||| | ||||||| || Sbjct 1151 CTGTTCCTGATCCAGGAGCACGACGTGTGGCAGAT-TACAAGAAGACCGAGGCCTCGTTC 1093 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| ||| | || | | | ||||| | || |||| | | ||| Sbjct 1092 TGGACGGCCGAGGAGCTGGACCAGGTGCACGACCTCAAGGACTGGGCCAACCA---GACG 1036 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || | ||||| || || |||| | |||||||||| |||| | ||| || ||| Sbjct 1035 GACAACGAGCGGTTCTTCATCAAGCACGTGCTGGCCTTCTTCGCCGCCAGCGACGGCATC 976 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCT-CAA-GAGTTGACCATTCCAGAGGTGTCGT 125232 || ||||| || ||| | || || || ||| || || | || ||||| | Sbjct 975 GTGAACGAGAACCTG--GCCATGAACTTCAGCAACGAAGTGCAGGTGCCCGAGGTCCGCT 918 Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 |||| ||||| ||||| ||| || |||||| | ||| | || ||||||| || | Sbjct 917 GCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACGCCGAGGTGTACTCGCTGCTCA 858 Query 125293 TTGACATGTACATT-----CGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGA 125347 |||| | ||||| | |||| || || ||| |||| | || ||||| Sbjct 857 TTGATACCTACATCAAGGACACGATGGAGAAG--AACCACCTGCTGCGT---GCCATCGA 803 Query 125348 CACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGA-CGACA 125406 ||| | |||| | || || || || |||| | | |||| ||| ||| Sbjct 802 GACGATCCCGTGCGTCAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGT 743 Query 125407 AGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGG 125466 ||| |||||| | || | ||| |||| ||||| ||||| ||||||||||| || |||| Sbjct 742 -GTCGTCGTACCCGGAGCGTCTGCTGGCGTTCGCTGCCGTGGAGGGCATCTTTTTCTCGG 684 Query 125467 G-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525 | | ||| ||| ||||||| ||||||||||||||||| |||||||| || |||| | Sbjct 683 GCTCGTTCTGCT-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGCTTC 625 Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT- 125584 |||||| | || |||||||| || | ||| ||||| || || ||| Sbjct 624 TCGAACGAGCTCATCAGCCGAGACGAAGGTATGCACACGGACTTCGCGTGCCTCATGTAC 565 Query 125585 TCGCAACTATCTGCGTCC-CGAG-TGC---AGATCCAGCGATGAAAAGGTCATCAACATT 125639 ||| | || |||| | || ||| | | || ||| || | | | || Sbjct 564 TCGAAGCT-----CGTCAACAAGCTGCCCGAAAGCC-GCG-TGCA--------CGAGATC 520 Query 125640 GTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCAT 125698 || ||| || ||| ||| || || ||||| | ||| || || || || ||| | Sbjct 519 GTGCGCGACGCGGTGGTGATTGAGCACGAGTTCGTGTGCGATTCGCTGCCTGTGGAGC-T 461 Query 125699 GATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT 125758 ||||||||||||| ||| |||||| ||||||| ||||| ||||| || || || || Sbjct 460 CATTGGCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCT 401 Query 125759 GTACGAGTTGATTGGCCG----CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGA 125814 |||| | | ||| || |||||| ||||||| |||||| || || || | ||| Sbjct 400 GTAC----TCACTGGGCGTGTCCAAGATCTACAACGTCAAGAACCCGTTCGACTGGATGG 345 Query 125815 CCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA--CAA 125872 || || || || |||| ||||||||||| || |||||| || ||||||| | | Sbjct 344 ACATGATCTCGCTGCAGGGCAAGACCAACTTCTTTGAGAAGCGCGTGGGCGAGTACTCCA 285 Query 125873 ACGCTACGGTGTCGGTGT 125890 | || ||| |||||||| Sbjct 284 AGGC--CGGCGTCGGTGT 269 >seq498 Length=26695 Score = 145 bits (160), Expect = 1e-29 Identities = 390/584 (67%), Gaps = 18/584 (3%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || |||||| | ||| ||| | | || ||||| | ||| ||| | | | | || Sbjct 4081 ACCAACGGCTCCTCCAACGGCATCATCCCCATGCTGCGCGTGTTCAACGACACGGCCCGG 4140 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGC-GCTATAGCCGTCTACTTGGAACCTTG 96925 ||||| ||||||||| || || ||| ||| | ||| ||||| | || || || Sbjct 4141 TACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCAGCT-TCGCCATCTACCTCGAGCCCTG 4199 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC- 96984 |||||| ||||| || || || | || ||||||| ||| ||| || | |||| Sbjct 4200 GCACGCCGACGTGTTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAACGA-GCTGCACC 4258 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044 | ||| | ||| |||| || || || |||||||| || |||||||||||||||| | | Sbjct 4259 GTGCCCGCGACCTGTTCTACGCGCTGTGGGTGCCCGACCTGTTCATGAAGCGCGTGGAGG 4318 Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104 | ||| | ||||| | | |||||| || | | ||||| || | ||| ||||||| Sbjct 4319 CCAACGGCAAGTGGAGTTTGTTCTGCCCCAACGAGGCCCCCGGGCTCTACGAGTGCTGGG 4378 Query 97105 GCGAAGAGTTTGAG-GCCAAGTACACGGC--CTACGAGCAAGAGGGCCG-ATACGTGAGA 97160 | || ||||||||| ||| | ||| | ||||||| |||||||| || ||| Sbjct 4379 GGGACGAGTTTGAGAGCC---TCTACGACAAGTACGAGCGCGAGGGCCGCGCCCGCAAGA 4435 Query 97161 CGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220 | | || | || | | |||||| |||||| || || ||| | ||||| || Sbjct 4436 CCA-TCAACGCGCAGCAGCTGTGGTTCGCCATCCTGGACGCGCAGATCGAGACGGGCGTG 4494 Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280 || | ||| ||||||||||| | | || ||||| |||||| | || | |||||| Sbjct 4495 CCCTTCATGCTCTACAAGGACGCGGCCAACCGCAAGTCCAACCAGCAGAACCTCGGCACC 4554 Query 97281 ATCAAGGGCTC---CAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACG 97337 ||| |||| ||| |||||| || | | |||||| | || || |||||| | Sbjct 4555 ATC---CGCTCCAGCAACCTGTGCTGCGAGGTGATGGAGTACACGTCCCCCGACGAGGTG 4611 Query 97338 GCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381 || || ||| ||||| || || ||||||||||| || || Sbjct 4612 GCCGTGTGCAACCTGGCCTCCGTGGCGCTGCCCAAGTTCGTGGA 4655 Score = 102 bits (112), Expect = 1e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 |||||||| || |||||||| | ||| | | | || || | |||||| | ||| Sbjct 5326 TACAAGACGGTGTGGGAGATCAAGCAGAAGGCAGTACTGGACTTGTCGGCCGACCGCGGT 5385 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | ||||||| ||||||||| ||| |||| | || | ||||| || ||| ||| Sbjct 5386 GCCTACATTTGCCAGAGTCAGTCGCTCAACATCCACATCGCCGACCCGACCATCAGCAAG 5445 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTA 98215 | || ||||| ||||| ||||| ||||| ||||| |||||||| ||||||||||| Sbjct 5446 CTCACGTCGATGCACTTCTACGCCTGGAAGAAGGGGCTCAAGACCGGCATGTACTA 5501 >seq182 Length=48706 Score = 107 bits (118), Expect = 3e-18 Identities = 215/317 (68%), Gaps = 4/317 (1%) Strand=Plus/Minus Query 127443 GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGG 127502 ||| ||||| ||||||||||||||| |||||| || || |||||||| | ||||||| Sbjct 40862 GAAGCCGTGGGTCAGGTGGCCTCCGCTGGGCAGGTCCAGGCCCATGATGCGGTCGTGCGG 40803 Query 127503 TTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACA 127562 | | | |||||||||||||||||||| |||||||||||| || || || Sbjct 40802 GCGCAGCAGCGCCGTGTACACGGCAAAGTTGGCGGGCGAGCCCGAGTAGGGCTGCACGTT 40743 Query 127563 CACTCCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAG 127622 || ||||| | | ||| || | | || | || |||||||| || | Sbjct 40742 GACGCCCCACTTGTCGGCGTCCAGGCCGTAGGCCGTCAGCGCGCGCTGCTGGCACAGGAT 40683 Query 127623 TTCGATGCGATCGATAAACTCGTTACCACCATAGTA--TCGCTTTCCGGGCCTACCCTCC 127680 ||||| ||||| | |||||| || || ||||| ||| ||| ||| ||||| Sbjct 40682 CTCGATCTTGTCGATGATCTCGTTGCCGCCGTAGTAGCGCGCGTTC--GGCAGGCCCTCG 40625 Query 127681 GAGTACTTGTTGATGAGACACGAACTCATGCATTCTCGCACCGGTAGAGTGGTAAAGTTT 127740 | |||||||||| | || ||||| | || ||| || || | | | || ||||| Sbjct 40624 GCGTACTTGTTGGTCAGGCACGAGCCCAGGCAGTCCATGACGGCGCGCGACGTGAAGTTC 40565 Query 127741 TCCGATGCGATCAACTC 127757 ||||| ||||| | ||| Sbjct 40564 TCCGAGGCGATGAGCTC 40548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741001119485200