Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq303 131 1e-25 >seq303 Length=37311 Score = 131 bits (144), Expect = 1e-25 Identities = 176/245 (72%), Gaps = 9/245 (4%) Strand=Plus/Minus Query 99522 GTGCGAGCCCGGCGCCCCGCTCCGCACGGTGAGCGAGGTGTTGAGCAGCAGCACGCCGCG 99581 ||||||| |||| | |||| || ||||| ||| ||||||||||||||||||||| | Sbjct 1633 GTGCGAGTTCGGCTCTCCGCGGCGGACGGTAAGCACGGTGTTGAGCAGCAGCACGCCCTG 1574 Query 99582 GCGCGCCCAGGCCTCCAGGCAGCCGTGCTGCGGCCGCGGGGTCCCGGGGAAGTTCTTCTG 99641 ||| |||| ||||||||||||| ||| || | | || | |||| | Sbjct 1573 GCGGCTCCAGCAGGACAGGCAGCCGTGCGACGGGCGGTCGATGCCCACGTCGTTCAT--- 1517 Query 99642 CACGGCCGCGT---AGATGTTCTGGAGGCTGGGCGGGATCGGAACGCCGCGGTTCACGCT 99698 |||| | | ||||||||| |||||||||||| ||| |||||| || ||| Sbjct 1516 ---GGCCTCCTTGAAGATGTTCTTGAGGCTGGGCGGCGGCGGGACGCCGTGGCGCACCGA 1460 Query 99699 GAAGGCCAGGCCGTGGGCCTGCCCGTGGCTGTGGTAGGGGTCCTGGCCCAGGATGACGAC 99758 |||| ||| |||||||||||| | | ||| || ||||||||||||||||| || || Sbjct 1459 GAAGCTCAGTCCGTGGGCCTGCTGCGGCCCGTGATACGGGTCCTGGCCCAGGATCACCAC 1400 Query 99759 CTTGA 99763 ||||| Sbjct 1399 CTTGA 1395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440864644525200