Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq507 168 6e-37 >seq507 Length=29800 Score = 168 bits (186), Expect = 6e-37 Identities = 194/261 (74%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 5500 CACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTC 5559 |||||| ||| ||||| ||||| ||||| | |||| || || | ||||||||| Sbjct 14942 CACGCCGGTGCTGCCGAAGCCGCCGGCGCCGCGCGCCGTGTCCTCGATCTCCGCCACCTC 14883 Query 5560 TTCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | ||| || ||| || | |||| ||| |||||||| | ||||| || || Sbjct 14882 CTGCACCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTCCCCGCGCTG 14823 Query 5620 TACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679 || ||| || | | || ||||||||| | |||||||||||||||||||||||| Sbjct 14822 CACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTC 14763 Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGG 5739 |||||| ||||||||||||||| ||||||||| | ||||| ||||||||| ||||| || Sbjct 14762 GGCGTCGATCACGCCCGCGCCCGTGTCGATGAACTTCTTGAGCGCCAGGCCAGAGCGCGG 14703 Query 5740 AGCCACGCGGCCGTAGCACCC 5760 |||||||| ||||||| || Sbjct 14702 CGCCACGCGCGCGTAGCAGCC 14682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430021537124240