Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq2085 123 2e-23 seq507 93.3 3e-14 >seq2085 Length=5363 Score = 123 bits (136), Expect = 2e-23 Identities = 370/564 (66%), Gaps = 29/564 (5%) Strand=Plus/Minus Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472 ||||| ||| ||||| || || |||| ||| || ||||| || ||||| | | ||| Sbjct 5043 AGCTGCTTCTGGAGCGGCTCGACATGATTCAGATACACGTGGGCATCTCCAATAACGTGA 4984 Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAG 25532 ||||||||||| || | | || | || | || | || ||| || | |||| Sbjct 4983 ACAAACTCTCCAGGCTTCAATCCAGCCACCTGCGCAACCAGTCGCGTAAGCAATGCGTAG 4924 Query 25533 CTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACA 25592 || ||||| || || || || || | ||||||| | |||| | |||||| | ||| || Sbjct 4923 CTAGCGATATTGAACGGCACGCCAAGTCCCATGT-CGGCCGAGCGCTGGTACATCTGGCA 4865 Query 25593 CGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTAT 25652 || ||||| ||||| |||||| ||||| || | ||| |||||| || || || || Sbjct 4864 GGAAAGCTCGCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCAT 4805 Query 25653 AAGGCCCA---AG-TCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGT-CTTCTGGG 25707 | || || || || ||||| || ||| | ||||| | || | || || Sbjct 4804 ----CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATGCGGCGGTCCGTCGGGT 4749 Query 25708 TTGTCC----CT----GATAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCG 25759 | || | || ||||| ||||| ||||| ||||| ||| || | Sbjct 4748 TCGTGCGCAGCTTGTGGATAACCCCCGCG---------AGCTGGTCCACGCCCTGGCCAG 4698 Query 25760 AGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACA 25819 ||| || || |||||||||||||| || || |||| || ||||||||| ||||| | Sbjct 4697 TGTAATCGGCATGCATGTCCGTGTACTTGGCGCCAAAATGCCGCCACTGGAAGCCGTAGA 4638 Query 25820 CCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCC-CTCTTATCCAAAAAGTCTCTG 25878 ||||||| ||||| || | || | | || ||||| | | |||| | | || | Sbjct 4637 CCGGTCCGAGGTCGCCCACCTCTC-GCGCCTGCAGCCCTCGACTGTCCAGATACTCGCGC 4579 Query 25879 GAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGAC 25938 || ||||| |||||||||| | | |||||| ||| | | | | ||| Sbjct 4578 GACGCATTGCCGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGTGTGCGCGCTGGTGTCG 4519 Query 25939 CCTCTGACGAACCACAGCAGCTCC 25962 || |||| |||||||||||||||| Sbjct 4518 CCGCTGATGAACCACAGCAGCTCC 4495 >seq507 Length=29800 Score = 93.3 bits (102), Expect = 3e-14 Identities = 203/304 (67%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 40693 CCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTCGC 40752 |||||||| | || || ||||| | ||||||| | |||||| || | | ||| | Sbjct 14889 CCACCTCCTGCACCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTCCC 14830 Query 40753 CCCTCTCGACCCGAAAAGGGTCGCACCCAAAGTTAAACAATATGACGCCGAGGTTGCCCC 40812 | | || || | || ||| | | ||| |||| || ||||| | |||||| | Sbjct 14829 CGCGCTGCACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCCGC 14770 Query 40813 TGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTCCAGGGCCAGGCCGG 40872 |||||||| ||| | ||| || || || ||| || || || | || |||||||| | Sbjct 14769 GGTAGTCGGCGTCGATCACGCCCGCGCCCGTGTCGATGAACTTCTTGAGCGCCAGGCCAG 14710 Query 40873 ACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTTACGGCCAGGTCCGTCTTTA 40932 | | || ||||| | ||||| ||| | ||||| || ||||||||||||| | Sbjct 14709 AGCGCGGCGCCACGCGCGCGTAGCAGCCGGTGGGCACGGCGACCACCAGGTCCGTCTTGA 14650 Query 40933 CCAGGGCCCTGCCAAAGGAGGGGACCACGACCGGGTAAGCGGCCGCTAGGTCGTAACCCG 40992 | ||| || |||| | ||||| |||| | ||| ||||||| ||||| |||| Sbjct 14649 CGAGGCCCTTGCCGCCCGCGGGGATCACGGCGTCGTAGGCGGCCGACAGGTCCAGGCCCG 14590 Query 40993 CGGC 40996 |||| Sbjct 14589 CGGC 14586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340111608172710