Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_006151.1 Length=143461 Score E Sequences producing significant alignments: (Bits) Value seq303 107 2e-18 >seq303 Length=37311 Score = 107 bits (118), Expect = 2e-18 Identities = 195/282 (69%), Gaps = 5/282 (2%) Strand=Plus/Minus Query 94135 GACGACGGCGCGCACGAGCCGCGCCCAGCCGAGCGGGGCGTGGGAGCCGGGGACCCCGCG 94194 || ||||||| | || | || |||||||| || ||| ||| || | ||||| Sbjct 1672 GATGACGGCGTCCGTGAACTGCTCCCAGCCGCGCTTCTTGTGCGAGTTCGGCTCTCCGCG 1613 Query 94195 CCGCACGGTCAGCGTCGTGTTCAGCAGCAGCACCCCGCGGCGCGCCCAGGCCTCCAGGCA 94254 || ||||| ||| ||||| ||||||||||| || |||| |||| |||||| Sbjct 1612 GCGGACGGTAAGCACGGTGTTGAGCAGCAGCACGCCCTGGCGGCTCCAGCAGGACAGGCA 1553 Query 94255 GCCGTGGGCGGGCGCGGGCAGCGTCGGGTACGTCGCCCG-GACCGCCGCGAAGATGTTGG 94313 |||||| | || |||| | | | |||||| | | || || ||||||||| Sbjct 1552 GCCGTGCGACGG-GCGGTCGATGCCC---ACGTCGTTCATGGCCTCCTTGAAGATGTTCT 1497 Query 94314 CCAGGCTCGGGGGGATCGGCACCCCGCGCCGGACGCTGAAGGCCAGCCCGTGGGCCTGGC 94373 ||||| || || ||| || ||| | || || |||| ||| ||||||||||| Sbjct 1496 TGAGGCTGGGCGGCGGCGGGACGCCGTGGCGCACCGAGAAGCTCAGTCCGTGGGCCTGCT 1437 Query 94374 CCGGCCCGTGGTACGGGTCCTGGCCGATGATGACCACCTTGA 94415 ||||||||| |||||||||||||| | ||| |||||||||| Sbjct 1436 GCGGCCCGTGATACGGGTCCTGGCCCAGGATCACCACCTTGA 1395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458911230013200