Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq43 109 9e-20 seq6132 96.9 5e-16 seq498 84.2 3e-12 >seq43 Length=84037 Score = 109 bits (120), Expect = 9e-20 Identities = 172/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || || || || |||||||| || ||||||||||| || | Sbjct 27784 CGCCAAGCGTCACCGCAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCCA 27726 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || || ||||| ||||| || |||||||| |||| || | |||| || |||| Sbjct 27725 TCCGCCGCCTTGCTCGCCGTGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGA 27666 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| ||||||| ||| ||| |||| || | | || || | Sbjct 27665 CGCGCGGCGTCCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACTCCGTGACGTACACGG 27606 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| || || ||||||| |||| || || | || || || | Sbjct 27605 AGCACGCGCGCCGCAAGACCGTGACGGCCATGGACGTCGTGTACGCGCTCAAGCGCCAGG 27546 Query 16671 GCCG 16674 | || Sbjct 27545 GACG 27542 >seq6132 Length=1042 Score = 96.9 bits (106), Expect = 5e-16 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||| ||| || || ||||| || |||||||| || ||||||||||| || | Sbjct 899 CGCTAAGCGTCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 957 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| || || ||||| || || |||||| | || || | |||| || |||| Sbjct 958 TCCGCCGTCTCGCACGCCGTGGCGGTGTGAAGCGTATTTCCGGCCTCATCTACGAGGAGA 1017 Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575 || | ||| | ||| | ||||| Sbjct 1018 CCCGCGGTGTCCTCAAGGTGTTCCT 1042 >seq498 Length=26695 Score = 84.2 bits (92), Expect = 3e-12 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 16438 GCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCG 16497 ||| ||||||| | ||| ||||||||||||||||| || || ||||| || ||||| Sbjct 1208 GCGCCATCGCAAAATTCTCCGAGATAACATCCAAGGTATTACGGGACCAGCGATACGTCG 1267 Query 16498 TCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGA 16557 || || || |||| ||| ||| | ||||||| | ||||| | |||| |||| Sbjct 1268 GCTCGCCCGCCGTGCTGGTATCATAAGAATCTCTGGTCTTGTCTACCACGAGACACGTGC 1327 Query 16558 TGTTTTGAAGA-TCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACG 16616 |||||| | || | || || | | || || | |||||| || || || ||| | | Sbjct 1328 TGTTTT-ACGAGTATTTCTGGATAATGTCATTCGAGATGCTGTCGTTTACACGGAGTATG 1386 Query 16617 CTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGA 16661 | |||||||| ||||| || |||| | | ||||| |||| Sbjct 1387 GGCATCGTAAGACAGTCACGAGCACGGATGTTCTGTATGCGTTGA 1431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069467295110