Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq498 87.8 2e-12 >seq498 Length=26695 Score = 87.8 bits (96), Expect = 2e-12 Identities = 424/667 (64%), Gaps = 8/667 (1%) Strand=Plus/Minus Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63256 ||||| |||| ||| ||| || ||||| || || || || | ||| || || || Sbjct 4332 CCACTTGCCGTTGGCCTCCACGCGCTTCATGAACAGGTCGGGCACCCACAGCGCGTAGAA 4273 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 || || | || | || |||||| || ||||| || || |||||| | | Sbjct 4272 CAGGTCGCGGGCACGGTGCAGCTCGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAA 4213 Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT-CCAGGCCGTTTGTTTCCTC 63375 | || | ||||| || || | ||| ||||| | | || || || ||| || | Sbjct 4212 CACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCGA-AGCTGCCCTTGCGCTTGCCGCCGC 4154 Query 63376 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63435 |||| || | ||| | || |||| || | || | || ||| || || || ||||| | Sbjct 4153 CCTGGTCCACGTACCGGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCGTTGG 4094 Query 63436 ATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT--TGATAG 63493 | || ||||| || || ||||| |||| ||||| || || |||| Sbjct 4093 AGGAGCCGTTGGTGCCTCGAATGTAGCTGTTGGTGGCGCGAATGTTGTGCATGCTGATG- 4035 Query 63494 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACC 63553 || || ||||| ||| || ||||| | ||||| | || | ||||||||||||||| Sbjct 4034 -CCGATACCCCCCGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATACC 3976 Query 63554 CTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63613 ||| ||| || || |||| | ||| || ||| |||| || |||| || Sbjct 3975 CTCGATGGAGTCGTCCTGCATGGCCAATAGGAAGCAGGAGGACAGCTGCGGACGCGGCGT 3916 Query 63614 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63673 ||| || ||||| | || || | |||||||| || | || | || | || | ||| Sbjct 3915 TCCGGCGTTAAACAGCGTCGGCGTCGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTA 3856 Query 63674 CGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACA 63732 |||||| | || | | || || | ||| || || || | || || ||||| | || Sbjct 3855 CGTCTCCAGCGCGGCCTGGATGTCGGCCTTG-TGGATGCCCAGCGCCACGCGCATAATCA 3797 Query 63733 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63792 | ||||| || | || || | |||| ||||| || | |||| || | | Sbjct 3796 TTTGCTGCGGACGCTCCACCACCTTGCCGTTTACGCGGAAGAGGTAGCCGCGCTCGAGTG 3737 Query 63793 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTT 63852 ||||||| || || |||| ||| ||||| || |||| || || |||||||||| | Sbjct 3736 TTTTAAACCCGAAGTAGTCGTACTCGAAGTCGCGGTCGTGGATGATGGCCGAGTTGAGCT 3677 Query 63853 TATCCTT 63859 ||||| Sbjct 3676 CGTCCTT 3670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622898376513200