Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq498 334 2e-86 seq98 86.0 2e-11 >seq498 Length=26695 Score = 334 bits (370), Expect = 2e-86 Identities = 641/941 (68%), Gaps = 8/941 (1%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||||||||| ||||| || ||| || || ||||| | ||| ||| |||| || Sbjct 3880 TTCACGCACGCGACGCCGACGCTGTTTAACGCCGGAACGCCGCGTCCGCAGCTGTCCTCC 3939 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | ||| ||||||| |||||||||||||||| |||||| || ||| | Sbjct 3940 TGCTTCCTATTGGCCATGCAGGACGACTCCATCGAGGGTATCTATGACACGCTCAAGCAG 3999 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || || |||||| || || || || || | || ||||| |||| || Sbjct 4000 TGCGCCTGCATCTCCAAGTGGGCGGGGGGTATCGGCATCAGCATGCACAACATTCGCGCC 4059 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||||| |||||||| ||||| || | ||| || || | | |||||||| || Sbjct 4060 ACCAACAGCTACATTCGAGGCACCAACGGCTCCTCCAACGGCATCATCCCCATGCTGCGC 4119 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 ||||| || | || || ||||||| |||||||| || || |||||||| || || Sbjct 4120 GTGTTCAACGACACGGCCCGGTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCAGCTTC 4179 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || || |||||||| || ||||| | || ||||| || || || || || ||| Sbjct 4180 GCCATCTACCTCGAGCCCTGGCACGCCGACGTGTTCGAGTTCCTGGACCTGCGCAAGAAC 4239 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||| ||||| || || |||||||| || || ||||| | |||| Sbjct 4240 CACGGCAACGAGCTGCACCGTGCCCGCGACCTGTTCTACGCGCTGTGGGTGCCCGACCTG 4299 Query 363967 TTTATGAAGCGCGTGGAGGC---AGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGT 364023 || ||||||||||||||||| || ||| ||| | || ||||| |||| Sbjct 4300 TTCATGAAGCGCGTGGAGGCCAACGGCAAG---TGGAGTTTGTTCTGCCCCAACGAGGCC 4356 Query 364024 CCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCG 364083 || || || | ||| ||||| ||||| | || || ||||| ||||| || Sbjct 4357 CCCGGGCTCTACGAGTGCTGGGGGGACGAGTTTGAGAGCCTCTACGACAAGTACGAGCGC 4416 Query 364084 GAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCG 364143 ||||| || || ||||| || ||| ||| |||| ||||| |||||| |||| || Sbjct 4417 GAGGGCCGCGCCCGCAAGACCATCAACGCGCAGCAGCTGTGGTTCGCCATCCTGGACGCG 4476 Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 ||||| ||||| || |||| ||| | ||||| || || |||||||||||||||| Sbjct 4477 CAGATCGAGACGGGCGTGCCCTTCATGCTCTACAAGGACGCGGCCAACCGCAAGTCCAAC 4536 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||| |||| || || || | |||||||| || |||| | || || ||||| Sbjct 4537 CAGCAGAACCTCGGCACCATCCGCTCCAGCAACCTGTGCTGCGAGGTGATGGAGTACACG 4596 Query 364264 GCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAA 364323 | ||||||||| ||||| || ||||| || || | ||||| || ||| || | Sbjct 4597 TCCCCCGACGAGGTGGCCGTGTGCAACCTGGCCTCCGTGGCGCTGCCCAAGTTCGTGGAC 4656 Query 364324 GATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTC 364383 || || || ||| ||||| | || || || || ||| | | || |||| ||| Sbjct 4657 GACGGCGTGTTCGACTACCAGAAACTCTACGAGGTCACCAAGGTGGTGACCCGCAACCTC 4716 Query 364384 GACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC-GTTCTAATATGCG 364442 ||||||| |||||| || || ||||| | | | || || || || || ||||| Sbjct 4717 AACAAGGTCATCGACGTTAACTACTATCCCGTGGCCG-AGGCGCGCAAGTCCAACATGCG 4775 Query 364443 TCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACG 364483 || ||||| || || | || || ||||||||||| |||| Sbjct 4776 CCACCGCCCCATCGGCATCGGCGTCCAGGGCCTCGCGGACG 4816 >seq98 Length=63659 Score = 86.0 bits (94), Expect = 2e-11 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 145575 TGGAACACTTCTTCGTCTGGATCATACACCGCAAGAAGGTATGCACCATATACACCAGTA 145634 ||||||| || ||| |||||||| ||||| | ||| || || || ||||| ||| Sbjct 44371 TGGAACATCTCGGTGTCCGGATCATAGCATGCAAGCAAGTACGCGCCGTAGACACCCGTA 44430 Query 145635 CGTTTTCCGCGACCGGTATACCCCGCAATTGGTACAAGATCACAACTATCACCCATTCCG 145694 || || || |||||| || | | || || || |||||| | ||||| || || Sbjct 44431 CGCTTGCCCCGACCGTGGAACGCACCGATCGGGACCAGATCAGCAGAGTCACCAATGCCA 44490 Query 145695 GCAAGATAATCCTTTTTAAGTTTTAGCCAATTGAGAGAACGTTTCGATGGTTCATAG 145751 | ||||||||||| || | ||| ||||| ||| | ||||| |||| || |||||| Sbjct 44491 TCGAGATAATCCTTCTTCAATTTGAGCCACTTGTGTGAACGGTTCGCAGGCTCATAG 44547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303248895903140