Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq498 257 2e-63 seq14 136 4e-27 seq54 131 2e-25 seq710 104 2e-17 seq50 87.8 2e-12 >seq498 Length=26695 Score = 257 bits (284), Expect = 2e-63 Identities = 944/1458 (65%), Gaps = 48/1458 (3%) Strand=Plus/Minus Query 145051 GTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGT 145110 ||||| || |||| | ||||| ||||||| |||||| || |||| ||| ||||| Sbjct 5208 GTACTTGTTCACGATCGTGAACTCACCGGCCAGCACACGGCGGTTGTACATGTTGGACGT 5149 Query 145111 GAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTA 145170 | |||| || | |||||||| ||||| ||||| || || || | || ||||||||| Sbjct 5148 GTAGGGCTCGATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAAGCCGTGGGCATGGG 5089 Query 145171 CGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCA 145230 ||||||| | || ||||| || ||||| || | || ||||| |||| |||| Sbjct 5088 GGCCACCAGCAGCGAGTTGCGAAGACCGTGTTTGACCACGTTCTCCTTGAGCGCCGCCCA 5029 Query 145231 ATCCCATAG---CGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCT 145287 | ||| || ||| | ||| | ||| ||||||||||| |||| || || |||| ||| Sbjct 5028 GTTCCAGAGACCCGAGGACGGGGTGACGCCCCACATGTCGAACTGGAAGATCCCCTTGCT 4969 Query 145288 GGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTT--TTGGCGAGCTCGCAACTC 145345 ||| || ||| || || | ||| | || || | ||||| | ||| | Sbjct 4968 GGCCGGCGAGCCCTGGAACGTCTCGTA--GGGGCCGAGCTCCTTGGCAATCTCCATGGAC 4911 Query 145346 GCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCA 145405 | ||| | ||| || | || || |||||| || | | |||||||| || | Sbjct 4910 GTCTCGACGGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCCTGC 4851 Query 145406 TCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACG 145465 ||||||||| ||| | || || | || || || ||||| ||||| | || | | Sbjct 4850 TCGCTCTCGAACGCGTAGTTCATGAGGATGAAGGCGTCCGCGAGGCCCTGGACGCCGATG 4791 Query 145466 CCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGG 145525 |||||||| || || ||||||| | | | |||| | | ||||| ||| | Sbjct 4790 CCGATGGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCGGCCACGGGATAGTAGTTAACG 4731 Query 145526 TCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCA-ACTTT-TCAA 145583 ||||| | || || | ||| || || ||||| || | | || | | ||| | Sbjct 4730 TCGATGACCTTGTTGAGGTTGCGGGTCACCACCTTGGTGACCT--CGTAGAGTTTCTGGT 4673 Query 145584 AGTCAAACCGAGCCTCGTCAACGACC--ACACAGCTATTGACGGCGATCGACGCCAAATT 145641 |||| ||| | ||||| |||| | |||| || | || |||| || Sbjct 4672 AGTCGAACACGCCGTCGTCCACGAACTTGGGCAGC--------GCCACGGAGGCCAGGTT 4621 Query 145642 ACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACA 145701 || || ||| ||| |||| | |||| | | | |||| ||||| ||||| | Sbjct 4620 GCACACGGCCACCTCGTCGGGGGACGTGTACTCCATCACCTCGCAGCACAGGTTGCTGGA 4561 Query 145702 TTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCAT 145761 |||||| || || || ||||| || || | |||| |||||||||||||||||| Sbjct 4560 GCGGATGGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCCGCGTCCTTGTAGAGCAT 4501 Query 145762 GTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT--AAAACGGTGCAAGTCCTGCGC- 145818 | | || |||| ||||| | ||||| |||| ||| ||| || | |||||| Sbjct 4500 GAAGGGCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAAC--CACAGCTGCTGCGCG 4443 Query 145819 ---ACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAA 145875 | | | ||| || ||||||||| ||||| || |||||| |||||| Sbjct 4442 TTGATGGTCTTGC----GGGCGCGGCCCTCGCGCTCGTACTTGTCGTAGAGGCTCTCAAA 4387 Query 145876 CGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATAC 145935 | || || |||| ||| | || ||||| || |||||| || | || ||| Sbjct 4386 CTCGTCCCCCCAGCACTCGTAGAGCCCGGGGGCCTCGTTGGGGCAGAACAAACTCCACTT 4327 Query 145936 GCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTC 145995 ||||||||| | ||||||| ||| |||| || ||||||||||||||||| | || ||| Sbjct 4326 GCCGTTGGCCTCCACGCGCTTCATGAACAGGTCGGGCACCCACAGCGCGTAGAACAGGTC 4267 Query 145996 GC--GCGCTTTGCAATCCTCAGCACCCATGTTTC--GCTTCAAATTAAGCACACT-ATAG 146050 || || | |||| ||| | || || ||| || || | || | ||| | Sbjct 4266 GCGGGCACGGTGCA--GCTC-GTTGCCGTGGTTCTTGC-GCAGGTCCAGGA-ACTCGAAC 4212 Query 146051 ATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCC 146107 | ||| |||||||| || || | |||| ||||| | || || || || ||| ||| Sbjct 4211 ACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCGAAGCTGCCCTTGCGCTTGCCGCCGCCC 4152 Query 146108 TGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCT 146167 |||||||||| || || ||| ||| || ||||||| |||||| || |||| ||| Sbjct 4151 TGGTCCACGTACCGGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCGTTGGAG 4092 Query 146168 ACGCCGTTCGTAGAGTTTATTCT-GGTGCCGCGGGAGCGCACGCAATGAACATTCACGCC 146226 |||||| || | | | | | | || | || ||| | | || | | | ||| Sbjct 4091 GAGCCGTTGGT-GCCTCGAATGTAGCTGTTGGTGGCGCGAATGTTGTGCATGCTGATGCC 4033 Query 146227 GAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTC 146286 || ||| || | ||||||| || |||||| | |||||| || ||||| || || Sbjct 4032 GATACCCCCCGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATACCCTC 3973 Query 146287 AATGCTATCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCC 146346 ||| ||| | ||| | | || ||||| ||| ||| ||||| |||||| || Sbjct 3972 GATGGAGTCGTCCTGCATGGCCAATAGGAAGCAGGAGGACAGCTGCGGACGCGGCGTTCC 3913 Query 146347 CGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGT 146406 || |||| |||||| |||||||||| || | || | ||| | | ||||| Sbjct 3912 GGCGTTAAACAGCGTCGGCGTCGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTACGT 3853 Query 146407 TTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTG 146466 || | ||| | || |||||| | || ||||||| || |||||||| | ||| || Sbjct 3852 CTCCAGCGCGGCCTGGATGTCGGCCTTGTGGATGCCCAGCGCCACGCGCATAATCATTTG 3793 Query 146467 TTGGGGCCGCTCCGCCAC 146484 || || |||||| |||| Sbjct 3792 CTGCGGACGCTCCACCAC 3775 >seq14 Length=110323 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||||||||| | || | || |||||||| || |||||||| ||||| Sbjct 101135 GCCACCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 101076 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||| || ||||||||||| ||| |||| | ||||||||||| || || Sbjct 101075 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGG 101016 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || |||||||| | | || | | || | | ||| | Sbjct 101015 GATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 100956 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| || | ||| || ||||| || || || ||||| |||||||| Sbjct 100955 GTCGAGCGTGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 100908 >seq54 Length=76991 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| ||||| | || | ||||||||||| || |||||||| |||||| Sbjct 57090 CCGCCACGAAGACGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 57031 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 57030 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 56971 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||||||||||| | | || | | || | | ||| | | Sbjct 56970 ATGCCCTCCTTGTCTTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 56911 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| || || || ||||| |||||||| Sbjct 56910 TCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 56864 >seq710 Length=19765 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || | ||||| |||||| ||||||||||| ||| ||| Sbjct 5324 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 5383 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | ||||||||||| || ||||| || || ||||| |||||||||||||| | | Sbjct 5384 TCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 5443 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | | |||| | ||| | ||| | || | ||| || || || || || || || | Sbjct 5444 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 5503 Query 131225 AAATCTGCATGA 131236 | |||||||||| Sbjct 5504 AGATCTGCATGA 5515 >seq50 Length=78893 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| | || | || |||||| || |||||||| || Sbjct 18464 CCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAG 18523 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || ||| Sbjct 18524 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 18583 Query 131128 ATTCCT 131133 |||||| Sbjct 18584 ATTCCT 18589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471975805996800