Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq447 96.9 4e-15 seq1235 84.2 3e-11 >seq447 Length=40481 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 126178 TTGGTGTAAATGTAGCGGGGAGCTG-CCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAA 126236 |||||| |||| || || | |||| ||| ||||||||| ||| ||| ||||| ||||| Sbjct 24597 TTGGTGAAAATATAACGTGC-GCTGGCCGCATCCTTGCCGCCCATCAAACGCGTACCAAA 24539 Query 126237 CTGACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTT 126296 ||||||| |||| || | || || |||||| ||| ||||| ||||| || | || Sbjct 24538 CTGACCGATCGGCGACAGGAGGTGGACGTTGTTGCTTCCAACAAAATCCTGGGCCATGTT 24479 Query 126297 GACAAT--GGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACG 126354 ||||| || ||| | ||||||||||||| | ||| | | ||||||| || Sbjct 24478 TACAATACAACCTTGCAAA--CTCTGCTCGCCGTGGTGGTACGCAGAGTGCTCGGAGACA 24421 Query 126355 TAGCCGCTCAGCTGCGCAACCTT 126377 ||||| ||| ||||| ||||| Sbjct 24420 TAGCCAGCCAGTTGCGCCACCTT 24398 >seq1235 Length=10588 Score = 84.2 bits (92), Expect = 3e-11 Identities = 176/259 (68%), Gaps = 10/259 (4%) Strand=Plus/Minus Query 15398 ATATTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCAC 15457 || || || ||||| |||| ||| || || || || || ||||| | |||||||| ||| Sbjct 6854 ATCTTCATCGGACCCACGTTCTACCAGCGCCTGAAGCATATGGTCGACGACAAGATCCAC 6795 Query 15458 GCGCGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGA--TCGC 15515 |||| |||| || | ||||||| ||| |||||||||| ||||| |||| Sbjct 6794 TCGCGCTCGCGTGGTCCCGTGACGATGCTGACGCGCCAGCCCATGGAAGGTCGTGCTCGC 6735 Query 15516 AAGGCGGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGT---GCACGGCG 15572 ||| |||| || || | ||||||||||| || || |||| | ||||||| Sbjct 6734 GAGG--GTGGTCTGCGTATGGGAGAGATGGAGCGCGATTG---TCTGATCTCGCACGGCT 6680 Query 15573 CCACCCAATTCCTCAACGAGCGCATGTTTCTCAACAGTGACCCGTTCCAGATTGACGTGT 15632 | || | ||||||| || ||| |||| |||| ||| ||| || | |||||| Sbjct 6679 CGGCCAACTTCCTCATGGACCGCCTGTTCGCCAACTCGGACGCGTACCGCGTGCACGTGT 6620 Query 15633 GCAAAGACTGCGGCATGAT 15651 || | |||||| || || Sbjct 6619 GCGATATCTGCGGTATCAT 6601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611344082152000