Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq451 192 1e-43 seq374 167 5e-36 seq5612 141 2e-28 seq447 116 8e-21 seq775 87.8 4e-12 seq5360 84.2 4e-11 >seq451 Length=28809 Score = 192 bits (212), Expect = 1e-43 Identities = 669/1024 (65%), Gaps = 39/1024 (4%) Strand=Plus/Minus Query 279351 GATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACC 279410 || ||||| |||| || |||||||| || || ||||| | ||||||||| ||| || Sbjct 17189 GACCTGTGCAACTGCGAGTTCTCGCTTGCCTACGGTGGTATGATTCTGCTGAACAACGCC 17130 Query 279411 CGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAG 279470 || || | ||||||||||| |||| || ||||| ||| ||||| || |||||| Sbjct 17129 CGTCTTCGCCTCAAGCGTGGCCACCGTTACGGTCTGTGCGGCCCCAACGGTTGTGGTAAG 17070 Query 279471 AGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCATCTGAG 279530 || || |||||||||||||| ||||| ||||| || || || || | | ||| Sbjct 17069 TCGACGCTCATGCGCGCCATTGCCAACGGCCAGCTCGAGGGCTTCCCCAGCAAGGACGAG 17010 Query 279531 GTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACTGTGTTC 279590 | | ||| |||| || |||||| || | | | || | || | ||| || Sbjct 17009 CTGAAGACTGTGTTCGTCGAGCACAACCTGCAGGCTTCGGAGGCTGAGCTGTCGGTGGTC 16950 Query 279591 GACTTCCTAACGTCTGA-CAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAATCATCCA 279649 |||||| | |||| | || | | || | || ||| || | | | || | Sbjct 16949 GACTTCATC----CTGATCGATGACGACCTGAAGGACA-CTCCCCGCAAGGAGG--TCGA 16897 Query 279650 GAAA-CTGGAGGCCAA-TGGTTTTGATGAAAGA-ATGCGTAATCTGCCAGTAGGTTCTCT 279706 ||| | ||| | | | || | || |||| || | | || || || || Sbjct 16896 GAACGCCCTTGGCGACGTCGGCTTCACCCCCGAGATGCAGGCTCAGGCCGTGGGCTCCCT 16837 Query 279707 GTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGT 279766 ||||||||||||||||||||| || | || | || ||||| || ||| || || | Sbjct 16836 GTCGGGTGGTTGGAAGATGAAACTCGAGCTGTCGCGTGCCATGCTGCTGAAGGCTGACAT 16777 Query 279767 CCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTC 279826 || || ||||||||||| || |||||| |||| || ||||| |||||||| | | Sbjct 16776 TCTGCTTCTTGATGAGCCGACGAACCACTTGGATGTCAAGAACGTCGCCTGGCTTGAGAA 16717 Query 279827 CTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCT 279886 |||||| ||||| || || || | ||| |||| || |||||||||||||||||||| Sbjct 16716 CTACCTGACCAGCGTGCCGACGGTCACCTCCATCATGGTGTCTCACGACTCTGGCTTCCT 16657 Query 279887 AGATGCCGTGTGCTCTGCCATCATTCACTATGAG---CAAAATCTGAAGCTCTCCAAGCA 279943 || |||||| | ||| || ||||||||| | || |||||| ||| |||| Sbjct 16656 CGACAACGTGTGTACCAACATTATCCACTATGAGACCCGCAAGCTGAAGATCTACAAG-- 16599 Query 279944 CATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCT 280003 || ||||| || ||||||| || || ||||| |||||||| || || Sbjct 16598 ----GGTAACCTTTCCAAGTTCGTGGAGCAGAAGCCCGAGGCCAAGGCCTACTACGAGCT 16543 Query 280004 GAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATC-ACAT 280062 | || | | || |||| ||||| ||||| || || |||| | ||| | | Sbjct 16542 GGAGTCGGAGAACGTGAAGTTCACGTTCCCGGAGCCTGGTTTCCTGGCTGATATCAAGAA 16483 Query 280063 CAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAATGGCCCCA 280122 ||| || || | ||||| || | ||| | || || || ||| | Sbjct 16482 CAAGGGTAAGC-CCATCATTCGTCTGACCAACTGCTCGTACAAGTACCCGGGTGCCCCGA 16424 Query 280123 A--CATC-TTCAGCAGTGTCAACTCG--CAGGT---TTCTAT-GAACTCACGGATTGGTG 280173 | | || ||| || || ||| | || ||| | || | || || | | Sbjct 16423 AGCCGTCGATCAACA---ACATTTCGGTGACGTGCGCTCTGTCGAGC---CGTATCGCCG 16370 Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233 | |||| ||||| ||||| |||||||| || || ||||| | ||||| || ||| Sbjct 16369 TGCTTGGCCCCAACGGTGCCGGTAAGTCGACGCTGATCAAGATGCTGACGGGTGAGGTGG 16310 Query 280234 AGGCCACTGAGGGGTC-CGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAG 280292 || | || ||| || | || |||||||| || |||||| | || ||||| |||||| Sbjct 16309 AGCCGAC-GAGCGGCCAGGTGTGGAAGCACCCTGCCATGCGTTTCGCCTACGTGGCTCAG 16251 Query 280293 CACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGG 280352 ||||||||||||||||| ||| ||||| ||| ||| | ||||| ||||| |||||| Sbjct 16250 CACGCTTTCCACCACATTGAGTCTCACCTTGACGAGACGGCCAACCAGTACATCCAGTGG 16191 Query 280353 CGCT 280356 |||| Sbjct 16190 CGCT 16187 >seq374 Length=32324 Score = 167 bits (184), Expect = 5e-36 Identities = 563/857 (66%), Gaps = 21/857 (2%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| |||||||| | ||||| ||||||| ||||| | Sbjct 1340 TCGAAGAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCATCCAGTCGAACGGGTTCTTC 1399 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGC-TACGAAGATGCGGTCTGCCACAAACTCCAG 251681 | ||||| ||| || || || | ||| || | ||||| ||||| ||||| | Sbjct 1400 ACGTTGTAGATCTTTGGCACACCCAGCGAGTAC-AACAGACGGTCGGCCACGAACTCGAT 1458 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGA 251740 ||||| | ||| || | ||||||||||| |||| | ||| ||| | || | | Sbjct 1459 GTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCACAGGGAGC-GAGTCGCGCA 1517 Query 251741 TGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACA 251800 ||| || | ||| | | || || || |||||| | | ||| | | | || Sbjct 1518 CGAACTCGTGCTCGATCACCACCGCGTCGCGCACAATCTCGTGCACGCGGCTCTCCGGCA 1577 Query 251801 GCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAA-CTGTTGGTGCAGACCCTCGTC 251858 |||||||| ||||||| ||||||| ||| | ||| || | || ||||| ||||||||| Sbjct 1578 GCTTGTTCACCAGCTTGGAGTACATGAGGCACGCGAAGTCCGT--GTGCATACCCTCGTC 1635 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 || ||||| | |||||| || | | |||||||||||| | || || ||| ||||||| Sbjct 1636 ACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCA 1695 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 |||||| | ||| ||||| || ||||| | | ||||| || | | || | || Sbjct 1696 GAAGATGGAGCAGAAGGAGCCCGAGAAGAAAATGCCCTCCACGGCGGCGAACGCCAGCAG 1755 Query 251979 GCGCTCAGCAAACGACTTGTCCTGCG---ACAAGAACTTCTGTGCCCA-TGCTGCCTTCT 252034 ||||| | ||||| | ||| | |||| | ||||| ||| || |||| Sbjct 1756 ACGCTCCGGGTACGACGACACACGCGGGTCGCACCACTTGAGCGCCCAGTGC-GCTTTCT 1814 Query 252035 T-TCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCC 252093 | | || | | ||||| || ||||| || | || || | ||| | ||||| Sbjct 1815 TCTTCACGCAC-GGGATCGTCTCGATCGCGCGCAGCAGGTGGTCCTTCTCCACGGCGTCC 1873 Query 252094 TCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATC 252153 | |||| || || | ||| || ||||||| |||||| |||||| ||| || ||| Sbjct 1874 TTGATGTACGTGTCGATCAGCAGCGAGTACACCTCCGAGTGGATGTTCTCGATGGCGATC 1933 Query 252154 TGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGCA 252213 ||| | | ||||| || || || | ||||| || ||||| | || Sbjct 1934 TGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACCTGCACTTCATTGCTGAAGTTCATGGCC 1993 Query 252214 ATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAG 252273 | |||||| |||| || || ||||| | || ||||| | || | | |||||||||| Sbjct 1994 AGGTTCTCGTTCACAATACCGTCGCTCGCAGCGAAGAACGCCAGCACGTGCTTGATGAAG 2053 Query 252274 TGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAACT 252333 ||||| | ||| | || || | |||||| | ||| || ||| | Sbjct 2054 AACCGCTCGTTGTCCGTCAGGTTCGC---CCAGTCCTTGAGGTCGTGCACCAGGTCCAGC 2110 Query 252334 TCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCAGGGTA 252392 || || |||||||||| | || | | |||||||||||||| ||| |||| || | | Sbjct 2111 TCCTCGGCCGTCCAGAACGAGGCCTCGGCCTTCTTGTACATCTGC-CACACGTCGTGCTC 2169 Query 252393 CTTGATTGGGAA-AGCA 252408 || ||| ||||| |||| Sbjct 2170 CTGGATCGGGAACAGCA 2186 >seq5612 Length=1235 Score = 141 bits (156), Expect = 2e-28 Identities = 487/740 (66%), Gaps = 27/740 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | |||||||| ||| ||||| | ||||| ||||||| ||||| || Sbjct 308 TCAAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATCCAGTCGAACGGGTTCTTG 367 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGC-TACGAAGATGCGGTCTGCCACAAACTCCAG 251681 | ||||| ||||| ||| |||| ||| | | |||||| ||||| ||||| | Sbjct 368 ACGTTGTAGATCTTGGACACGCCCAGTGAGTAC-AGCAGGCGGTCGGCCACGAACTCGAT 426 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGA 251740 ||||| | ||| || | |||||||||||||| | | ||| || | | || || | Sbjct 427 GTACTGGCACATGAGCGCCGAGTTCATGCCAATGAGCTCCACA-GGCAGCGAATCGCACA 485 Query 251741 TGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACA 251800 ||| || | || | | || || || ||| || | | ||| | | || Sbjct 486 CGAACTCGTGCTCAATCACCACCGCGTCGCGCACGATCTCGTGCACGCGGCTTTCGGGCA 545 Query 251801 GCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAA-CTGTTGGTGCAGACCCTCGTC 251858 ||||||| | ||||| ||||||| ||| | ||| || | || ||||| ||| ||||| Sbjct 546 GCTTGTTGACGAGCTTCGAGTACATGAGGCACGCGAAGTCCGT--GTGCATACCTTCGTC 603 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 || ||||||| |||||| || | | ||| |||||||| | || || ||| ||||||| Sbjct 604 TCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTTCTTGAGCCA 663 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 |||||| | ||| || || || ||||| | | ||||| || | | || | || Sbjct 664 GAAGATGGAGCAGAACGAGCCCGAGAAAAAGATGCCCTCCACGGCAGCGAACGCCAGCAG 723 Query 251979 GCGCTCAGCAAACGACTTGTCCTGCG---ACAAGAACTTCTGTGCCCA-TGCTGCCTTCT 252034 ||||| | ||||| | ||| | |||| | ||||| ||| || |||| Sbjct 724 ACGCTCCGGGTACGACGACACTCGCGGGTCGCACCACTTGAGCGCCCAGTGC-GCTTTCT 782 Query 252035 TTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATC--GTC 252092 | || ||||| || ||||| ||| | || |||| ||| |||| ||| Sbjct 783 TCTTGACGCACGGGATCGTCTCGATGGCACGCAGCAGGTGGTTCTTCTC--CATCGTGTC 840 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACAT 252152 || |||| | ||||| || || ||||||| ||| | |||||| ||| || || Sbjct 841 CTTGATGTAGGTATCAATGAGCAGCGAGTACACCTCGGCGTGGATGTTCTCGATGGCGAT 900 Query 252153 CTGGTAAGCATAGAATAGACGC-GCGGA---AGGGTCGGTG-ACTTCCGTGGAAAAGTTG 252207 |||| |||| |||| || ||||| ||| || ||||| || ||||| Sbjct 901 CTGG-AAGC----CGTAGAAGCAGCGGACCTCGGGCACCTGCACTTCGTTGCTGAAGTTC 955 Query 252208 TTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTG 252267 | || | |||||| |||| ||||| |||||| | || |||||| | || | | |||| Sbjct 956 ATGGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCGGCGAAGAAGGCCAGCACGTGCTTG 1015 Query 252268 ATGAAGTGACGCTCATCGTC 252287 |||||| ||||| | ||| Sbjct 1016 ATGAAGAACCGCTCGTTGTC 1035 >seq447 Length=40481 Score = 116 bits (128), Expect = 8e-21 Identities = 242/359 (67%), Gaps = 6/359 (2%) Strand=Plus/Plus Query 218650 GAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGT 218709 ||| | ||||| || || | |||| ||||| ||||| |||| ||||| ||||| Sbjct 24392 GAACTAAAGGTGGCGCAACTGGCTGGCTATGTCTCCGAGCACTCTGCGTACCACCACGGC 24451 Query 218710 GAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAAC 218769 ||||||||| |||| ||| |||||| |||||| ||||| | ||| || || |||||| Sbjct 24452 GAGCAGAGTTTGCAAGGTTGTATTGTAAACATGGCCCAGGATTTTGTTGGAAGCAACAAC 24511 Query 218770 ATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGT 218829 | || | ||| || | ||||||||||||| | ||| | |||| || |||||| Sbjct 24512 GTCCACCTCCTGTCGCCGATCGGTCAGTTTGGTACGCGTTTGATGGGCGGCAAGGATGCG 24571 Query 218830 GCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAAT--- 218886 || || | ||||| || || || ||| | | || |||| | | | | || Sbjct 24572 GCCAGCGCACGTTATATTTTCACCAACTTGGAACAGCTTACTCGCCGGATCTACGATCCA 24631 Query 218887 CAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAG 218946 | | | | || ||| |||||||||||||| || || || ||||| ||||| || Sbjct 24632 CTTGACAACGACGTG---CTTAAGTATCTTGACGAAGACGGCCAGTCGATCGAGCCGGAA 24688 Query 218947 TGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGG 219005 ||||| | || ||| ||| | |||| || || || | |||||||| ||||| Sbjct 24689 TGGTACATTCCAATTATCCCGATGGTGCTTGTCAACGGCAGTGACGGTATCGGAACAGG 24747 >seq775 Length=18063 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 280713 ATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAA 280772 || |||||||| || || ||||||||||| || || ||||||| || || ||||| | Sbjct 6450 ATCCGCGGTCTCTCGGGCGGCCAGAAGGTGAAGCTCGTCATCGCTGCGGCCATGTGGAAC 6509 Query 280773 CACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGC 280832 | ||| ||| || | || || || ||||| || || || |||||||||| | |||||| Sbjct 6510 CGCCCGCACTTGCTGGTGCTGGATGAGCCGACGAATTACCTGGACCGCGCGGCGCTGGGC 6569 Query 280833 GCTCTG 280838 || ||| Sbjct 6570 GCCCTG 6575 >seq5360 Length=1337 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 1229 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 1170 Query 142565 CCAC 142568 |||| Sbjct 1169 CCAC 1166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027754229373070