Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq14 107 2e-18 seq54 104 2e-17 >seq14 Length=110323 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | || || | || | |||||| || || || |||||||| |||||| Sbjct 101134 CCACCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 101075 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || || |||||||| || || |||||| |||| || ||||| ||||| || || Sbjct 101074 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 101015 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 ||||| || ||||| |||||| || || | | || | | ||| | | || ||| Sbjct 101014 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 100955 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || ||||||||||| || || || || |||||||| Sbjct 100954 TCGAGCGTGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 100908 >seq54 Length=76991 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||||||| || || || ||||| || || ||| Sbjct 57060 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCA 57001 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| ||||| || || ||||| || ||||| ||| || || || Sbjct 57000 GCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGAATTTTCTGCTTC 56941 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | | ||| | | || ||||||| || | ||| ||||||||||| || Sbjct 56940 ACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTC 56881 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 56880 TTCACGAAGATCTGCAT 56864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420102295167240