Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq2085 141 8e-29 >seq2085 Length=5363 Score = 141 bits (156), Expect = 8e-29 Identities = 457/701 (65%), Gaps = 25/701 (4%) Strand=Plus/Minus Query 20134 CGGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTA 20193 ||| || ||||| || || || || |||||| | | || ||||| | ||| | || Sbjct 5068 CGGGAACGGACGCGGTGTTCGAGTAAGCTGCTTCTGGAGCGGCTCGACATGATTCAGATA 5009 Query 20194 GATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGC 20253 | |||||||||||| | ||||| |||||| || || | | |||| || || || Sbjct 5008 CACGTGGGCATCTCCAATAACGTGAACAAACTCTCCAGGCTTCAATCCAGCCACCTGCGC 4949 Query 20254 AAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTC 20313 || || || | | | ||||| || || || || || || || | |||||||| Sbjct 4948 AACCAGTCGCGTAAGCAATGCGTAGCTAGCGATATTGAACGGCACGCCAAGTCCCATGTC 4889 Query 20314 TCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAA 20373 |||| | ||| |||| ||| ||||||||||| ||||| || || || || || || || Sbjct 4888 GGCCGAGCGCTGGTACATCTGGCAGGAAAGCTCGCCGTCGGCCACGTAGAACTGGCAGAA 4829 Query 20374 CAAGTGACAGGGCGGAAGCGCCA--TCAACGACAAGTCCGCCGGGTTCCACGCACACATA 20431 || ||| || ||||| ||||||| ||| || | |||||||| |||||||| ||| Sbjct 4828 CATGTGGCACGGCGGGAGCGCCATCTCATTGAGA--TCCGCCGGATTCCACGCCGACAGC 4771 Query 20432 ATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCA 20491 | ||| | | || ||| || | | | | || || | ||||| Sbjct 4770 ACGATGCGGCGGTCCGTCGGGTTCGTGCGCAGCTTGTGGATAACCCCCGCGAGCTGGTCC 4711 Query 20492 AACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCAC 20551 | |||||||| || || || |||| | |||| |||| || ||||| |||| |||| Sbjct 4710 ACGCCCTGGCCAGTGTAATCGGCATGCATGTCCGTGTACTTGGCGCCAAAATGCCGCCAC 4651 Query 20552 TGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGC---CAGGCCGCGCCCG 20608 ||||| ||||| || ||||| | || ||| || ||| |||| ||| || || | | Sbjct 4650 TGGAAGCCGTAGACCGGTCCGAGGTCGCCCACC--TCT-CGCGCCTGCAGCCCTCGACTG 4594 Query 20609 GCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGA-CTCCTGTTCTTGAA----- 20662 |||| |||| | || |||| |||||| || | || |||| | || | Sbjct 4593 TCCAGATACTCGCGCGACGCATTGCCGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGTG 4534 Query 20663 AGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGC 20722 || | |||| ||| || | | ||||| |||||||| | | ||||| ||| Sbjct 4533 TGCGCGCTGGTGTC------GCCGCTGATGAACCACAGCAGCTCCTCGGCCACGCCGCGC 4480 Query 20723 CAAAACACCCGCTTTGTGGTTAGTA-AGGGA--AAGTGGTCCCGCAGACTATACCTGGCC 20779 || ||||| ||||| || || || | |||| | || ||||| || || ||| | Sbjct 4479 CAGAACACGCGCTTGGTCGTGAGCAGCGGGAACACGTTGTCCCTGAGGCTGAACCGCATC 4420 Query 20780 TGCATGCCAAATAGAGAGAGGGTGCCTATGCCGGTGCGGTC 20820 ||| ||| || | || || ||||| | || |||||||| Sbjct 4419 TGCGCGCCGAAGACCGACAGCGTGCCCGTCCCCGTGCGGTC 4379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441338207406800