Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq50 98.7 8e-16 seq14 93.3 3e-14 seq507 87.8 1e-12 >seq50 Length=78893 Score = 98.7 bits (108), Expect = 8e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| ||||||||||| || ||||||||||||||||| |||||||| || | Sbjct 18463 ACCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGA 18522 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || |||| |||| ||||||||||| || |||||||||||||| || Sbjct 18523 GAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 18576 >seq14 Length=110323 Score = 93.3 bits (102), Expect = 3e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| ||||||||| |||||||| || || Sbjct 101134 CCACCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTC-GCT 101076 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| || | |||||||| || || |||||||||||||| || ||| Sbjct 101075 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGG 101016 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| ||| || ||||| Sbjct 101015 GATGCCCTCCTTGTCCTGAATCTTCTGCTT 100986 >seq507 Length=29800 Score = 87.8 bits (96), Expect = 1e-12 Identities = 190/278 (68%), Gaps = 10/278 (4%) Strand=Plus/Plus Query 39936 GCCGCGGGCATGGACCTGAGGAGCGCATACGACTACGTGATTCCTCGCAA-CGACCGAAT 39994 ||||||||| |||||||| | ||| |||||| |||||| || ||| || | || Sbjct 14586 GCCGCGGGCCTGGACCTGTCGGCCGCCTACGACGCCGTGATCCC-CGCGGGCGGC--AAG 14642 Query 39995 G--CTGGTGAAGACGGACAT--TGCTCTACAACTACCCAAAGAGTGCTACGGTAGAATAG 40050 | || || ||||||||| | || || | | |||| | ||||||| | | | Sbjct 14643 GGCCTCGTCAAGACGGACCTGGTGGTCGCCG--TGCCCACCGGCTGCTACGCGCGCGTGG 14700 Query 40051 CGCCTCGGTCCGGACTGGCGCTGAAGCACGGTATCGACATTTCGGCCGGCGTCATAGATT 40110 |||| || || || |||||||| ||| | ||||||| || ||||| || || Sbjct 14701 CGCCGCGCTCTGGCCTGGCGCTCAAGAAGTTCATCGACACGGGCGCGGGCGTGATCGACG 14760 Query 40111 CTGACTACACGGGCAACGTGGGCGTGGTGATGGTGAACAACGGAGACGAGGCCTTTGTGG 40170 | |||||| ||||||||||||||| | || | ||| ||| | ||||| ||| | Sbjct 14761 CCGACTACCGCGGCAACGTGGGCGTGATCCTGTTCAACCACGCGGCCGAGGACTTCCCCG 14820 Query 40171 TGCTTCGAGGAGACCGCATCGCCCAGCTCATACTGGAG 40208 ||| || || |||||| | || |||||||| || ||| Sbjct 14821 TGCAGCGCGGGGACCGCGTGGCGCAGCTCATCCTCGAG 14858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397032058228540