Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq54 136 9e-27 seq14 134 3e-26 seq710 114 3e-20 seq51 100 7e-16 >seq54 Length=76991 Score = 136 bits (150), Expect = 9e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || | ||| || || |||| || || || ||||| || |||||| Sbjct 57091 TCCGCCACGAAGACGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCT 57032 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 |||||||| ||||| || | || || || ||||||||||||||||| || | || Sbjct 57031 CAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 56972 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || || || || || |||||| |||||||| || || || || || || || Sbjct 56971 GATGCCCTCCTTGTCTTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 56912 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||||||||| |||||||| ||||| ||||| |||||||| Sbjct 56911 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 56864 >seq14 Length=110323 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || || | ||| || || ||||| || |||||| Sbjct 101134 CCACCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 101075 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| |||||||| | || || || ||||||||||| ||||| || | ||| Sbjct 101074 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 101015 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || ||| |||||||| || || || || || || || Sbjct 101014 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 100955 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 100954 TCGAGCGTGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 100908 >seq710 Length=19765 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | ||||||||| ||||| || | || || || ||||||||| Sbjct 5326 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 5385 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || ||||| || | ||||| || || || |||||||||||| || || || || Sbjct 5386 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 5445 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || ||| || || || || |||||||| ||||| || ||||| ||||| || || Sbjct 5446 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 5505 Query 288466 ATCTGCATTAT 288476 |||||||| || Sbjct 5506 ATCTGCATGAT 5516 >seq51 Length=78767 Score = 100 bits (110), Expect = 7e-16 Identities = 106/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 326194 TGCCACGGATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCT 326253 ||| || | ||||||||| || |||| ||||||||||||||||||||| || |||||| Sbjct 16126 TGCAACAGTTGCATCGCGCACATTCAGTAGTTTTCCACGAAGAGGGAAAACGCCATATTG 16185 Query 326254 CTCGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGT 326313 || || ||||| || | ||| || || | |||||||| | || ||||| || || || Sbjct 16186 GTCACGTCCGACAACTGCCAGTCCAGCCACTGCAAGTGCCTTAGCTGAATCACCTTCTGT 16245 Query 326314 CAGAATGAGAGTGCACATT 326332 ||| || |||| ||||| Sbjct 16246 CAGGAT--AAGTGAACATT 16262 Score = 87.8 bits (96), Expect = 4e-12 Identities = 175/255 (69%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 325342 ATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTG-ATGT 325400 |||||| || |||||||| | | ||||||||||| ||| || | ||| | | || Sbjct 15223 ATCCTTGCCTCCCTGCAAACGAGTTCCGAACTGGCCGGACGGATAC-AGCAGCGGAAGGT 15281 Query 325401 TATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGC 325460 | || || || ||||||| || | ||| || || || |||| || | |||| Sbjct 15282 TGTTAGAACCCACGAAATCCTGCGCCATGTTTACAATTGTAGAGTGCAATGAAGTCTCGC 15341 Query 325461 CATGGTGATAGGCGCTATG--CTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTC 325518 | ||||| ||||| |||| | ||||| |||||| | ||| || |||||||| || Sbjct 15342 CGTGGTGGTAGGCCGTATGTTCACTGCA--GTAACCAGCAAGCTGCGCCACCTTCACCTC 15399 Query 325519 GGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACC 325578 | |||||| |||||||| | | | | ||| ||| || || || || ||||| ||| Sbjct 15400 GCTCGTCAGCTTGCGCTTCAGACAAGCAAATAGCACCTTACGCTGTGAGATTTTGAGACC 15459 Query 325579 ATCAACGACCGACGG 325593 ||| || || ||||| Sbjct 15460 ATCGACCACTGACGG 15474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179559633201060