Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq451 145 2e-29 seq374 114 3e-20 seq5612 113 1e-19 seq51 104 5e-17 >seq451 Length=28809 Score = 145 bits (160), Expect = 2e-29 Identities = 669/1049 (64%), Gaps = 37/1049 (4%) Strand=Plus/Plus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| |||||||| | ||||| ||||| |||||||||| ||| |||||| Sbjct 16164 CTCCTTGTCCTCACCGGACTGGAAGCGCCACTGGATGTACTGGTTGGCCGTCTCGTCAAG 16223 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 ||| ||| |||||||||||||| ||||| |||||||| || | |||||| || || Sbjct 16224 GTGAGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGCAGGGTG 16283 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || ||| | || | |||| | ||||| |||| ||| || || || Sbjct 16284 CTTCCACACCTGGCCGCTCGTCGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGA 16343 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTG-------GAGTTCAGCGATACCT 333546 || || ||||| || ||| | ||| | || | | ||| || || ||| Sbjct 16344 CTTACCGGCACCGTTGGGGCCAAGCACGGCGATACGGCTCGACAGAGCGCA-CGTCACC- 16401 Query 333547 GGGCATTCACGTTG-TCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCG 333605 | | | |||| || | | | || | |||||| |||||| | | || Sbjct 16402 --GAAATGTTGTTGATCGACG----GCTTCGGGGCACCCGGGTACTTGTA-CGAGCAGTT 16454 Query 333606 CGT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGG 333664 || || ||||||| |||| ||||| | | ||||| || ||||| || Sbjct 16455 GGTCAGACGAATGATGGGCTTACCCTTGTTCTTGATATCAGCCAGGAAACCAGGCTCCGG 16514 Query 333665 GAACTTCCACGT---GGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACG 333721 |||| | || | | ||| || ||| || ||||||| | | ||||| Sbjct 16515 GAACGTGAACTTCACGTTCTCCGACTC---CAGCTCGTAGTAGGCCTTGGCCTCGGGCTT 16571 Query 333722 CTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTA 333781 || || |||||||| ||| || || |||||||| |||||||||| || | || || Sbjct 16572 CTGCTCCACGAACTTGGAAAGGTTACCCTTGTAGATCTTCAGCTTGCGG---GTCTCATA 16628 Query 333782 ATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCA 333841 |||||||| ||| || || ||||||||| || |||||||| ||||| || | | | Sbjct 16629 GTGGATAATGTTGGTACACACGTTGTCGAGGAAGCCAGAGTCGTGAGACACCATGATGGA 16688 Query 333842 CGAAACGTCCTTAAGGTTGATCAGGTA-TTCAATC-AGCCACCTCACGTTAGACACAGAA 333899 | || | | | || ||||||| ||| || ||||| ||||| ||| Sbjct 16689 GGTGACCGTCGGCACGCTGGTCAGGTAGTTC--TCAAGCCAGGCGACGTTCTTGACATCC 16746 Query 333900 AGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCA 333959 | ||||| |||||||| |||||||| || | | || ||||| ||||| ||||| | Sbjct 16747 AAGTGGTTCGTCGGCTCATCAAGAAGCAGAATGTCAGCCTTCAGCAGCATGGCACGCGAC 16806 Query 333960 AGAGCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCA 334019 || |||||||||| ||||| || || || || | | | | || || ||| Sbjct 16807 AGCTCGAGTTTCATCTTCCAACCACCCGACAGGGAGCCCACGGCCTGAGCCTGCATCTCG 16866 Query 334020 ATATCAAAGCCAACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTTTCC 334079 ||||| || | || | | ||| || | || | | || ||| Sbjct 16867 GGGGTGAAGCCGACGTCGCCAAGGGCGTTCTCGACCTCCTTGCGGG---GAGTG---TCC 16920 Query 334080 TTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGGACCCGTCG 334139 || | | ||||| | |||||||| | | | || | || || || | | Sbjct 16921 TTCAGGTCGTCATCGATCAGGATGAAGTCGACCACCGACAGCTCAGCCTCCGAAGCCTGC 16980 Query 334140 AGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTCAAGCTGA 334199 || | ||| || ||| | |||| |||| | ||| |||||| || || ||||| Sbjct 16981 AGGTTGTGCTCGACGAACACAGTCTTCAGCTCGTCCTTGCTGGGGAAGCCCTCGAGCTGG 17040 Query 334200 CCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACAGACCG 334259 ||||| |||| |||||||| || || || ||||| ||||| || || ||||||||| Sbjct 17041 CCGTTGGCAATGGCGCGCATGAGCGTCGACTTACCACAACCGTTGGGGCCGCACAGACCG 17100 Query 334260 TAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCCACCATAT 334319 || |||| |||||||| || | || | |||||||| ||||| | ||||| || Sbjct 17101 TAACGGTGGCCACGCTTGAGGCGAAGACGGGCGTTGTTCAGCAGAATCATACCACCGTAG 17160 Query 334320 GCCAGAGAAAATTCACAATCACACAGATC 334348 || || || || || || | ||||| || Sbjct 17161 GCAAGCGAGAACTCGCAGTTGCACAGGTC 17189 >seq374 Length=32324 Score = 114 bits (126), Expect = 3e-20 Identities = 279/412 (68%), Gaps = 8/412 (2%) Strand=Plus/Minus Query 243318 CGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGG 243377 ||| || || ||| | || || || |||||| ||||||| ||||| ||| || Sbjct 1738 CGTGGAGGGCATTTTCTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGG 1679 Query 243378 TGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCA 243437 | ||||||||||| | | || |||||| | ||||| || |||||||| | ||| Sbjct 1678 CCTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGGTATGCACAC 1619 Query 243438 ACAGTTCG-GTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACG-GTC 243495 | |||| ||| || ||||| || ||||| ||||||||| || || || || Sbjct 1618 GGACTTCGCGTGC-CTCATGTACTCCAAGCTGGTGAACAAGCTGCCGGA-GAGCCGCGTG 1561 Query 243496 AAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCA 243555 | | || | || || || | | ||| | || ||| | ||||| | | || Sbjct 1560 CACGAGATTGTGCGCGACGCGGTGGTGATCGAGCACGAGTTCGTGCGCGACTCGCTCCC- 1502 Query 243556 TGCCG-GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGA 243614 || | ||| || ||||||||||| | |||||| | ||||||||||| ||||| ||||| Sbjct 1501 TGTGGAGCTGATCGGCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGA 1442 Query 243615 CCGCATTTTCATCGCGCTTGGTTATGAGAAAG-TGTACAACTCCAAGAACCCCTTTGCCT 243673 ||| | || | ||| ||| | || |||| | |||||| |||||||| || | || Sbjct 1441 CCGTCTGTTGTACTCGC-TGGGTGTGCCAAAGATCTACAACGTGAAGAACCCGTTCGACT 1383 Query 243674 TTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 ||||| | || || || || || || || ||||||||||| ||||| || Sbjct 1382 GGATGGACATGATCTCTCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGT 1331 >seq5612 Length=1235 Score = 113 bits (124), Expect = 1e-19 Identities = 263/386 (68%), Gaps = 12/386 (3%) Strand=Plus/Minus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||| ||||||| ||||| ||| || | |||||||| || | | || ||| Sbjct 678 TTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGCTTCTCGAAC 619 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAA 243464 ||| ||||||| || ||||| || | ||| | |||| ||| || ||||| || || Sbjct 618 GAGCTCATCAGCCGAGACGAAGGTATGCACACGGACTTCGCGTGC-CTCATGTACTCGAA 560 Query 243465 GCTCCAGAACAAGCTACCATTCGAAA--CG-GTCAAACAAATCATCACAGAAGCAGTTGA 243521 |||| |||||||| || ||||| || || | | ||| | || || || | Sbjct 559 GCTCGTCAACAAGCTGCC---CGAAAGCCGCGTGCACGAGATCGTGCGCGACGCGGTGGT 503 Query 243522 AAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCG-GCTTATTGGCATGAACTCTG 243580 | || | || ||| | ||||| | | || || | ||| |||||||||||||| | Sbjct 502 GATTGAGCACGAGTTCGTGTGCGATTCGCTGCC-TGTGGAGCTCATTGGCATGAACTCGG 444 Query 243581 AACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATG 243640 |||||| | ||||||||||| ||||| ||||||||| | | | | | ||| || Sbjct 443 CGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTACTCAC-TGGGCGTG 385 Query 243641 AGAAAG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 ||| | |||||| ||||||||| || | || ||||| | || ||||| || || Sbjct 384 TCCAAGATCTACAACGTCAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGC 325 Query 243700 AAAACTAACTTCTTCGAAAAGCGTGT 243725 || || |||||||| || ||||| || Sbjct 324 AAGACCAACTTCTTTGAGAAGCGCGT 299 >seq51 Length=78767 Score = 104 bits (114), Expect = 5e-17 Identities = 307/466 (66%), Gaps = 8/466 (2%) Strand=Plus/Plus Query 297253 TGGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGATTCCACTCGAACCATTCAC 297312 ||||| || | ||||||| | |||||||| |||||||| || || ||||| | Sbjct 15013 TGGATGGTGGCAAGGGATAGATGAAGACCAACCCGTACCGATACCCTCCGCGCCATTAAT 15072 Query 297313 CAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGATCTTGTCACCGTCATCATA 297372 || | | || || | |||||| || ||| | || || | | ||| || |||| Sbjct 15073 GAGCAGCATTGGGATGATAGGCACGTAGTACACGGGCTCAACTGGGAAACCATCGTCAT- 15131 Query 297373 CAG-ATATTTCAGAAGATTATCGTCCGTATCGACGAAAACCTGTCGAGTCTGAGGGTTCA 297431 ||| |||| ||| ||| ||| || || ||| ||| || || || | | Sbjct 15132 CAGCATATCGCAGCAGAGCATCATCTTCCTCAGGGAATACCAAACGTGTGTGCTTTTGAA 15191 Query 297432 GTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGA 297491 | | ||||||||||| || | || || |||||| || |||||||| | | |||| Sbjct 15192 GAATCGTGAAAATATAACGAGGGCTTGCTGCATCCTTGCCTCCCTGCAAACGAGTTCCGA 15251 Query 297492 ACTGGCCCTCCGGCAACAACCAGTTG-ATGTTATTGCTTCCGACATAATCCTGTGCAAGG 297550 ||||||| ||| || | ||| | | ||| || || || ||||||| || | | Sbjct 15252 ACTGGCCGGACGGATAC-AGCAGCGGAAGGTTGTTAGAACCCACGAAATCCTGCGCCATG 15310 Query 297551 TTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATG--CTCTGCAA 297608 || || || || |||| || | ||||| ||||| ||||| |||| | ||||| Sbjct 15311 TTTACAATTGTAGAGTGCAATGAAGTCTCGCCGTGGTGGTAGGCCGTATGTTCACTGCA- 15369 Query 297609 CGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAAT 297668 |||||| | ||| || |||||||| ||| |||||| |||||||| | | | | Sbjct 15370 -GTAACCAGCAAGCTGCGCCACCTTCACCTCGCTCGTCAGCTTGCGCTTCAGACAAGCAA 15428 Query 297669 ATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGG 297714 ||| ||| || || || || ||||| |||||| || || ||||| Sbjct 15429 ATAGCACCTTACGCTGTGAGATTTTGAGACCATCGACCACTGACGG 15474 Score = 104 bits (114), Expect = 5e-17 Identities = 107/139 (77%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 298315 TGCCACGGATGCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCT 298374 ||| || | ||||||||| ||||||| ||||||||||||||||||||| || |||||| Sbjct 16126 TGCAACAGTTGCATCGCGCACATTCAGTAGTTTTCCACGAAGAGGGAAAACGCCATATTG 16185 Query 298375 CTCGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGT 298434 || || ||||| || | ||| || || | |||||||| | || ||||| || || || Sbjct 16186 GTCACGTCCGACAACTGCCAGTCCAGCCACTGCAAGTGCCTTAGCTGAATCACCTTCTGT 16245 Query 298435 CAGAATGAGAGTGCACATT 298453 ||| || |||| ||||| Sbjct 16246 CAGGAT--AAGTGAACATT 16262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102791400824500