Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq498 257 2e-63 seq374 174 2e-38 >seq498 Length=26695 Score = 257 bits (284), Expect = 2e-63 Identities = 1109/1731 (64%), Gaps = 48/1731 (3%) Strand=Plus/Minus Query 113602 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTT 113661 ||||||||| || ||||||||||||| ||||||||| || | |||||||| | | ||| Sbjct 5502 GTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAGCTT 5443 Query 113662 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 113721 | || || || | ||| || ||| | || || ||| || || Sbjct 5442 GCTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTAGGCACC 5383 Query 113722 ACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 113781 || || |||| || || | || ||||| |||||| |||||||| || |||| Sbjct 5382 GCGGTCGGCCGACAAGTCCAGTACTGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTT 5323 Query 113782 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCAT 113841 | ||| | | ||| ||||| || | || || | |||||| || | || | || Sbjct 5322 CTCCTTGACGTGATCGGGGATGGCCTTCACCTTCTGCACGGAGCCGCCGTCGTTCAGGAT 5263 Query 113842 GAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTT 113901 ||| || || || ||||| || | || |||| |||| || || | ||| Sbjct 5262 CTGATTGCGCACGTCGGGTGTCCAGATGCCCAGCTCAATGAGCTCCTTCATCAGGTACTT 5203 Query 113902 ATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGG 113961 || || | |||||||| || || || | || || |||| |||||| || Sbjct 5202 GTTCACGATCGTGAACTCACCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGTAGGG 5143 Query 113962 CTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCAT 114021 ||| | | |||| ||||| || | ||| ||||| ||||| || ||||||||||| |||| Sbjct 5142 CTCGATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAAGCCGTGGGCATGGGGGCCAC 5083 Query 114022 GAGAAGGCTGTTACGGAGACCCT-TTTCCCTAATGCGTTC--CTTGAGGGCGTCCCAGTC 114078 || || ||| || ||||| | ||| | | ||||| |||||| || |||||| Sbjct 5082 CAGCAGCGAGTTGCGAAGACCGTGTTTGACCA---CGTTCTCCTTGAGCGCCGCCCAGTT 5026 Query 114079 GTAGTT----GAG--CTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGA 114132 || ||| | || | ||| ||||| || ||||||| ||| || | | Sbjct 5025 CCAGAGACCCGAGGACGGGGTGACGCCC---CACATGTCGAACTGGAAGATCCCCTTGCT 4969 Query 114133 GGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCC--GCCAAT-TCGGAGCT 114189 ||| ||||| |||| || |||||||| ||||| | |||| | |||| || | Sbjct 4968 GGCCGGCGAGCCCTGGAACGTCTCGTAGGGGCCG---AGCTCCTTGGCAATCTCCATGGA 4912 Query 114190 CGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTC 114249 || ||||| ||| |||| || || ||||| || ||| || | | ||||| Sbjct 4911 CGTCTCGACGGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCCTG 4852 Query 114250 GTCGGAATCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCG 114307 ||| || |||||| ||| || | || || | |||||||| || ||||| ||| Sbjct 4851 CTCGCTCTCGAACGCGTAGTT--CATGAGGATGAAGGCGTCCGCGAGGCCCTGGACGCCG 4794 Query 114308 AGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTC 114367 | ||| || ||||| || | ||| || ||||| || || |||||||||| | || Sbjct 4793 ATGCCGATGGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCGGCCACGGGATAGTAGTTA 4734 Query 114368 CTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCG 114427 ||||| ||| | || || || ||| || ||||| |||| || | || || | | Sbjct 4733 ACGTCGATGACCTTGTTGAGGTTGCGGGTCACCACCTTGGTGACCTCGTAGAGTTTCTGG 4674 Query 114428 TAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTA 114487 || || || || | || | || |||| || || || | || ||||| || Sbjct 4673 TAGTCGAACACGC------CGTCGTCCACGAACTTGGGCAGCGCCACGGAGGCCAGGTTG 4620 Query 114488 CACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TGAAC 114545 ||||| | ||| || |||||||| || | || |||| || || | Sbjct 4619 CACACGGCCACCTCGTCGGGGGACGTGTACTCCATCACCTCGCAGCACAGGTTGCTGGAG 4560 Query 114546 TCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCA 114605 |||||||| | ||||| || || ||||| ||| ||| |||||||| |||| Sbjct 4559 CGG--ATGGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCCGCGTCCTTGTAGAGCA 4502 Query 114606 TGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCGGCTG 114665 || | ||| |||||||| | || | | || || || ||| || | || || Sbjct 4501 TGAAGGGCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCA--CAGCTGCTGCGC 4444 Query 114666 GCACAGTGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACT 114722 | | ||| ||| || || ||||| ||||||||| ||||||| ||||||| Sbjct 4443 GTTGA-TGGTCTTGCGGGCGCGGCCCTCGCGCTCGTACTTGTCGTAGAGGCTCTCAAACT 4385 Query 114723 CTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGAC 114782 | || ||| | ||| ||||||| || |||| | |||||||| | | ||| | | Sbjct 4384 CGTCCCCCCAGCACTCGTAGAGCCCGGGGGCCTCGTTGGGGCAGAACAAACTCCACTTGC 4325 Query 114783 CACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATC-C 114841 | |||| || ||||||||||| ||||| || | ||| || || |||| || || | Sbjct 4324 CGTTGGCCTCCACGCGCTTCATGAACAGGTCGGGCACCCACAGCGCGTAGAACAGGTCGC 4265 Query 114842 CGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCC 114901 | || | || | || | || || || |||| |||| || || | | || Sbjct 4264 GGGCACGGTGCAGC-TCGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAACACGTCG 4206 Query 114902 GCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTT 114958 |||||||| || || ||||| | |||| ||||| || | || |||||| Sbjct 4205 GCGTGCCAGGGCTCGAGGTAGATGGCGAAGCTGCCCTTGCGCTTGCCGCCGCCCTGGTCC 4146 Query 114959 ACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCA 115018 || |||| || ||| | || || ||||| ||||| || ||||| || | || ||| Sbjct 4145 ACGTACCGGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCGTTGGAGGAGCCG 4086 Query 115019 TTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCC 115078 || || || ||||| || |||| | | | || ||| || || |||||| Sbjct 4085 TTGGTGCCTCGAATGTAGCTGTTGGTGGCGCGAATGTTGTGCATGCTGATGCCGATACCC 4026 Query 115079 CCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAG 115138 || |||||||| ||||| ||||||| | |||| || | ||||| || ||||| ||| Sbjct 4025 CCCGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATACCCTCGATGGAG 3966 Query 115139 TCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTG 115198 || ||| | || | ||||||||| |||| || || | || || || ||||| Sbjct 3965 TCGTCCTGCATGGCCAATAGGAAGCAGGAGGACAGCTGCGGACGCGGCGTTCCGGCGTTA 3906 Query 115199 AAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCAA 115257 || || || || |||||||| |||| | || | || ||||| ||||| ||||||| Sbjct 3905 AACAGCGTCGGCGTCGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTCGTACGTCTCCAG 3847 Query 115258 GACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACAT 115308 |||| | ||||| || ||| || || | || || ||||||| ||| Sbjct 3846 CGCGGCCTGGATGTCGGCCTTGTGGATGCCCAGCGCCACGCGCATAATCAT 3796 >seq374 Length=32324 Score = 174 bits (192), Expect = 2e-38 Identities = 365/536 (68%), Gaps = 16/536 (3%) Strand=Plus/Plus Query 125752 CTTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT 125811 |||| ||| || || || ||||||||||||||||| ||||| || | | ||| | Sbjct 1315 CTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGAGAGATCAT 1374 Query 125812 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 125871 ||||| | || || |||||||| ||| | || ||||||| || | | | | Sbjct 1375 GTCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTTGGCACACCCAGCGAGTACAA 1434 Query 125872 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 125931 ||||| || | ||| |||| ||||||| |||| | | |||||||| ||||| || Sbjct 1435 CAGACGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAG 1494 Query 125932 GTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGA 125990 | ||| ||||||| ||| | |||| | | ||| || |||| || || ||||| | Sbjct 1495 CTCCACA-GGGAGCGAGTCGCGCACGAACTCGTGCTCGATCACCACCGCGTCGCGCACAA 1553 Query 125991 TGGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC------CA 126044 | |||| | | | | || || ||| || |||| |||| | || Sbjct 1554 TCTCGTGCACGCGGCTCTCC---GGCAGCTTGTTCACCAGCTTG--GAGTACATGAGGCA 1608 Query 126045 CGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTC 126104 || | || || ||| | ||||||||||||| ||| || || |||||||||| ||| | Sbjct 1609 CG-CGAAGTCCGTGTGCATACCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGC 1667 Query 126105 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGA 126164 | |||||||| || |||||||| | |||||| || | || || || ||||||||||| | Sbjct 1668 CAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAAA 1727 Query 126165 TTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGAC-TTTGTGTCA 126223 | |||||||| |||||||| | |||||||| | | || || || | ||| Sbjct 1728 TGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTACGA-CGACACACGCGGGTCG 1786 Query 126224 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||||||| | |||||| ||||| || |||| | ||||||| |||| |||||| Sbjct 1787 CACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACGCACGGGATCGTCTCGATCGC 1842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597306782411600